View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8088_low_5 (Length: 638)

Name: NF8088_low_5
Description: NF8088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8088_low_5
NF8088_low_5
[»] chr3 (1 HSPs)
chr3 (7-615)||(47532600-47533207)
[»] chr5 (5 HSPs)
chr5 (364-449)||(39583603-39583688)
chr5 (505-594)||(39627100-39627189)
chr5 (368-443)||(39627257-39627335)
chr5 (505-594)||(39616378-39616467)
chr5 (383-443)||(39616535-39616598)


Alignment Details
Target: chr3 (Bit Score: 551; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 551; E-Value: 0
Query Start/End: Original strand, 7 - 615
Target Start/End: Complemental strand, 47533207 - 47532600
Alignment:
Q  7 tagcagagaggcaaaattgttcctaaagaccatttagtttaatttttcaaaactactaattacttgaaacaataaaataaatttcttcgaaaacttgaaa 106  Q
    ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47533207 tagcaaagaggcataattgttcctaaagaccatttagtttaatttttcaaaactactaattacttgaaacaataaaataaatttcttcgaaaacttgaaa 47533108  T
Q  107 attgtataatcaaaatgcatttaatgttctcactatcagttaataccgtaattcacattgcaacagggttctcaaattcactagcaatttaagcagagta 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  47533107 attgtataatcaaaatgcatttaatgttctcactatcagttaataccgtaattcacattgcaacagggttctcaaattcactagcaatttaaccagagta 47533008  T
Q  207 taagctgattcatcctgaatttaacnnnnnnnaccatagctgcagttttagttgtttcctcttctatcgatcactagttttccttccggtactttcacta 306  Q
    |||||||||||||||||||||||||       |||||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||||    
T  47533007 taagctgattcatcctgaatttaactttttt-accatagctgcagttttagttgtttccttttctattgatcactagttttccttccagtactttcacta 47532909  T
Q  307 tcagtgtcggtggcttcactgtcagtgtttgtggcttcactatcggtgtccgtggcttcactatcagtatctgtggcttcactttcactgtcactttctt 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47532908 tcagtgtcggtggcttcactgtcagtgtttgtggcttcactatcggtgtccgtggcttcactatcagtatctgtggcttcactttcactgtcactttctt 47532809  T
Q  407 ccaaaacgtacaggtcatagatgcatatcaaggcagctgcagctgcagccataatcatattcatacagagcattcgcctttgcttccgccttcgctcttc 506  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47532808 ccaaaaggtacaggtcatagatgcatatcaaggcagctgcagctgcagccataatcatattcatacagagcattcgcctttgcttccgccttcgctcttc 47532709  T
Q  507 atcgtcaacatttctacctcgttttttatttgagctaaacaagctaggggtcatgcttgaaatcctgcattaaagtttagctacattactgtttgaaatt 606  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47532708 atcgtcatcatttctacctcgttttttatttgagctaaacaagctaggggtcatgcttgaaatcctgcattaaagtttagctacattactgtttgaaatt 47532609  T
Q  607 tacatagag 615  Q
    |||||||||    
T  47532608 tacatagag 47532600  T

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Target: chr5 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 364 - 449
Target Start/End: Original strand, 39583603 - 39583688
Alignment:
Q  364 tcactatcagtatctgtggcttcactttcactgtcactttcttccaaaacgtacaggtcatagatgcatatcaaggcagctgcagc 449  Q
    |||||||| || |||||| |||||||||||||||||||||||||||||   | ||||| |||||| |||||||| ||||| |||||    
T  39583603 tcactatctgtgtctgtgtcttcactttcactgtcactttcttccaaatatttcaggtaatagatacatatcaatgcagccgcagc 39583688  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 505 - 594
Target Start/End: Complemental strand, 39627189 - 39627100
Alignment:
Q  505 tcatcgtcaacatttctacctcgttttttatttgagctaaacaagctaggggtcatgcttgaaatcctgcattaaagtttagctacatta 594  Q
    ||||| ||| |||||||||| ||||| |||||||| |||||||||||||  ||||| |||||||  ||||||||| ||||| ||||||||    
T  39627189 tcatcatcatcatttctaccacgtttattatttgaactaaacaagctagttgtcatacttgaaagtctgcattaatgtttaactacatta 39627100  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 368 - 443
Target Start/End: Complemental strand, 39627335 - 39627257
Alignment:
Q  368 tatcagtatctgtggcttcactttcactgtcactttcttc---caaaacgtacaggtcatagatgcatatcaaggcagc 443  Q
    ||||||| || ||| ||||||||||||| |||||||||||   ||||| |||||||| |||||||| |||||| |||||    
T  39627335 tatcagtgtccgtgtcttcactttcactatcactttcttcttccaaaatgtacaggtaatagatgcctatcaacgcagc 39627257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 505 - 594
Target Start/End: Complemental strand, 39616467 - 39616378
Alignment:
Q  505 tcatcgtcaacatttctacctcgttttttatttgagctaaacaagctaggggtcatgcttgaaatcctgcattaaagtttagctacatta 594  Q
    ||||| ||| |||||||||| || ||||||||||| |||||||||||||   ||||  ||||||  ||||||||| ||||  ||||||||    
T  39616467 tcatcatcatcatttctaccacgctttttatttgaactaaacaagctagtcatcatatttgaaagtctgcattaatgttttactacatta 39616378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 383 - 443
Target Start/End: Complemental strand, 39616598 - 39616535
Alignment:
Q  383 cttcactttcactgtcacttt---cttccaaaacgtacaggtcatagatgcatatcaaggcagc 443  Q
    |||||||||||||||||||||   |||| |||| |||||||| |||||||| |||||| |||||    
T  39616598 cttcactttcactgtcactttcttcttctaaaaggtacaggtaatagatgcctatcaacgcagc 39616535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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