View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8088_low_6 (Length: 521)
Name: NF8088_low_6
Description: NF8088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8088_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 420; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 18 - 454
Target Start/End: Complemental strand, 40696460 - 40696020
Alignment:
| Q |
18 |
gttaagaacactttaaccaacattgattcttggcatttggatggatatagtttctttgttgttggatatggagaaggagaatggaaagaagagtcaaggt |
117 |
Q |
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| T |
40696460 |
gttaagaacactttaaccaacattgattcttggcatttggatggatatagtttctttgttgttggatatggagaaggagaatggaaagaagagtcaaggt |
40696361 |
T |
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| Q |
118 |
caagttataacctatttgaccccgtcgttcgctcaactgtgcaagtgttccctggaggatggagtgcagtttatgtgtatcctgacaatccaggaatgtg |
217 |
Q |
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| T |
40696360 |
caagttataacctatttgaccccgtcgttcgctcaactgtgcaagtgttccctggaggatggagtgcagtttatgtgtatcctgacaatccaggaatgtg |
40696261 |
T |
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| Q |
218 |
gaacttgagatcacagaatttgaaaagttggtatttaggtgaagagctttatgtgagagtttttgatcctaatcctaaccctgccaaagagaaacctcct |
317 |
Q |
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| T |
40696260 |
gaacttgagatcacagaatttgaaaagttggtatttaggtgaagagctttatgtgagagtttttgatcctaatcctaaccctgccaaagagaaacctcct |
40696161 |
T |
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| Q |
318 |
ccacagaatctacttttatgtggttagttacttattatatacttcatgtgaaaaatttatcttattgatgctat----tagggttatgtgattgatgtca |
413 |
Q |
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| T |
40696160 |
ccacagaatctacttttatgtggttagttacttattatatacttcatgtgaaaaatttatcttattgatgctacgtactagggttatgtgattgatgtca |
40696061 |
T |
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| Q |
414 |
ttgaattgtttacatgattaaaggcaagtatcaaccttcag |
454 |
Q |
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| T |
40696060 |
ttgaattgtttacatgattaaaggcaagtatcaaccttcag |
40696020 |
T |
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