View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8088_low_7 (Length: 511)
Name: NF8088_low_7
Description: NF8088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8088_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 383; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 17 - 493
Target Start/End: Original strand, 31543716 - 31544198
Alignment:
| Q |
17 |
attcttcaggaaataaccatggcttgagattcaagttattgctaaggttgagggttgttagatctagtagggttccaaagcaaaagtctgggattgaagt |
116 |
Q |
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| T |
31543716 |
attcttcaggaaataaccatggcttgagattcaagttattgctaaggttgagggttgttagatctagtagggttccaaagcaaaaatctgggattgaagt |
31543815 |
T |
|
| Q |
117 |
gaagttattgtaaccaaggttcacggtttggagcatgtttaggaaagccaaatcaggcgaaggaccgttcagtgagttgttatgaagatcgatgtcggtg |
216 |
Q |
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| T |
31543816 |
aaagttattgtaaccaaggttcacggtttggagcacgtttaggaaagccaaatcaggcaaaggaccgttgagtgagttgttatgaagatcgatgtccgtg |
31543915 |
T |
|
| Q |
217 |
agattattgagtgagttgaaattctgagggattgtccctgtgagtgaacttgatggaagcttgatggcagtgacaacttgattagattggtcgcacgtga |
316 |
Q |
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| T |
31543916 |
agattattgagagagttgaaattctcagggattatccctgtgagagaacttgatggaagcttgatggcggtgacaacttgattagattggtcacacctga |
31544015 |
T |
|
| Q |
317 |
tgccgttccatttgcagtagtgaatgttgctagaccagcctttgggagttggggtcagtgctttcataagttgggacatgtaatctgcatctttctctcc |
416 |
Q |
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| T |
31544016 |
tgccattccatttgcagtagtgaatgttgccagaccagcctttgggagttggggtcagtgctttcataagttgggacatgtaatctgcatctttctctcc |
31544115 |
T |
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| Q |
417 |
ataagtt---ggaa---tgacaatgatgaggatggaaaaatagtacaaaactgattgttggggcaatgttttcatgcttattt |
493 |
Q |
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| T |
31544116 |
attagttatagtaaccgttacaatgatgaggatggaaaaatagtacaaaactgattgttggggcaatgttttcatgcttattt |
31544198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 22 - 68
Target Start/End: Complemental strand, 31550919 - 31550873
Alignment:
| Q |
22 |
tcaggaaataaccatggcttgagattcaagttattgctaaggttgag |
68 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
31550919 |
tcaggaaataaccatggcttgagattcaagttattactaaggttgag |
31550873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 316 - 400
Target Start/End: Original strand, 31535365 - 31535449
Alignment:
| Q |
316 |
atgccgttccatttgcagtagtgaatgttgctagaccagcctttgggagttggggtcagtgctttcataagttgggacatgtaat |
400 |
Q |
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| T |
31535365 |
atgccgttccatctgcagtagtgagtgttgttagaccagttagagggagttggggttagtgctttcaaaagtttggacatgtaat |
31535449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 282
Target Start/End: Original strand, 31535217 - 31535334
Alignment:
| Q |
165 |
caaatcaggcgaaggaccgttcagtgagttgttatgaagatcgatgtcggtgagattattgagtgagttgaaattctgagggattgtccctgtgagtgaa |
264 |
Q |
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|||||||||| ||| |||| | ||||||||||| || || ||||||| ||| |||| | ||| ||||||| || ||||| ||| || ||||||||| |
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| T |
31535217 |
caaatcaggcaaagtaccggtgagtgagttgttgtggaggtcgatgtgggttagataagagagagagttgaggttggaagggagtgtaccagtgagtgaa |
31535316 |
T |
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| Q |
265 |
cttgatggaagcttgatg |
282 |
Q |
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| T |
31535317 |
cttgatggaagcgtgatg |
31535334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 323 - 400
Target Start/End: Complemental strand, 31550656 - 31550579
Alignment:
| Q |
323 |
tccatttgcagtagtgaatgttgctagaccagcctttgggagttggggtcagtgctttcataagttgggacatgtaat |
400 |
Q |
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|||| ||||||| ||| ||||| |||||||||| ||||||||||||| |||||||| |||||||||||| |||| |
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| T |
31550656 |
tccaattgcagtgatgagtgttgttagaccagccagaaggagttggggtcaatgctttcaaaagttgggacatataat |
31550579 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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