View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8088_low_8 (Length: 473)
Name: NF8088_low_8
Description: NF8088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8088_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 430; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 18 - 463
Target Start/End: Original strand, 51532232 - 51532677
Alignment:
| Q |
18 |
ttggtttggatacattgtactacagtgaatacaggaactccggaccgggtgctggggtagcgaatcgggtgaaatggtctgggtaccatgtaatgaatga |
117 |
Q |
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| T |
51532232 |
ttggtttggatacattgtactacagtgaatacatgaactccggaccgggtgctggggtagcgaatcgggtgaaatggtctgggtaccatgtaatgaatga |
51532331 |
T |
|
| Q |
118 |
ttcgagcgaggctgaaaagtttactgtagctcaatttattctgggggatctttggttaccttccgctggagtaacttacactgcaggtttgacagtgtaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51532332 |
ttcgagcgaggctgaaaagtttactgtagctcaatttattttgggggatctttggttaccttccgctggagtaacttacactgcaggtttgacagtgtaa |
51532431 |
T |
|
| Q |
218 |
agtaaatttaacttaaaaccatgtatgtctcagtataatactgtatttagtgattaaacaagtggcaattcataacagttcttggtattgtatcaaagaa |
317 |
Q |
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| T |
51532432 |
agtaaatttaacttaaaaccatgtatgtctcagtataatactgtatttagtgattaaacaagtgggaattcataacagttcttggtattgtatcaaagaa |
51532531 |
T |
|
| Q |
318 |
aaactatgtaaaattaaaacggagacgggttattattaaccccaatttattaataagtacttgattattagatatattcagttcttttattctgtatatg |
417 |
Q |
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| T |
51532532 |
aaactatgtaaaattaaaacggagacgggttattattaaccccaatttattaataagtacttgattattagatattttcagttcttttattctgtatatg |
51532631 |
T |
|
| Q |
418 |
atcttcaacatgcttttcattgtgtgtgtgaattttaaactctctg |
463 |
Q |
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| T |
51532632 |
atcttcaacatgcttttcattgtgtgtgtgaattttaaactctctg |
51532677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 29 - 361
Target Start/End: Original strand, 51526496 - 51526837
Alignment:
| Q |
29 |
acattgtactacagtgaatacaggaactccggaccgggtgctggggtagcgaatcgggtgaaatggtctgggtaccatgtaatgaatgattcgagcgagg |
128 |
Q |
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|||||||||||| |||||||| |||||| ||||||||||| |||||||| || |||||||||||||| || ||||||||| ||||||||||||| |||| |
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| T |
51526496 |
acattgtactacgctgaatacatgaactctggaccgggtgccggggtagctaaccgggtgaaatggtcaggataccatgtattgaatgattcgagtgagg |
51526595 |
T |
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| Q |
129 |
ctgaaaagtttactgtagctcaatttattctgggggatctttggttaccttccgctggagtaacttacactgcaggtttgacagtgtaaagtaaatttaa |
228 |
Q |
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|| || || ||||| |||||||||||| |||| ||||||||||||||||| | || |||||||||||| | ||||||| |||||||||||||||||| |
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| T |
51526596 |
ctactaaattcactgtggctcaatttattgaggggaatctttggttaccttccaccggtgtaacttacacttctggtttgaaagtgtaaagtaaatttaa |
51526695 |
T |
|
| Q |
229 |
ct-------taaaaccatgtatgtctcagtataatactgtatttagtgattaaacaa---gtggcaattcataacagttcttggtattgtatcaaagaaa |
318 |
Q |
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|| | || ||||||||||| | ||||||| ||||||||||||||||| | || | |||||| ||| |||||||||||||||||||||||| |
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| T |
51526696 |
cttgacaaattaattcatgtatgtctaaatataatattgtatttagtgattaaaagagttgttgtaattcacaacggttcttggtattgtatcaaagaaa |
51526795 |
T |
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| Q |
319 |
aactatgtaaaattaaaacggagacgggttattattaacccca |
361 |
Q |
| |
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|| ||||||||| |||| ||| |||||||| | ||||||||| |
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| T |
51526796 |
aagtatgtaaaagcaaaa-ggacacgggttactgttaacccca |
51526837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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