View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8089_high_1 (Length: 757)
Name: NF8089_high_1
Description: NF8089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8089_high_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 673; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 673; E-Value: 0
Query Start/End: Original strand, 20 - 744
Target Start/End: Complemental strand, 335902 - 335181
Alignment:
| Q |
20 |
aaacgtccacttcccattccattacactgtatggacaccacacccctatcccttctactttctatttgagatcaagatatgattctttcttgtatagttt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
335902 |
aaacgtccacttcccattccattacactgtatggacaccacacccctatctcctct---ttctatttgagatcaagatatgattctttcttgtatagttt |
335806 |
T |
|
| Q |
120 |
agagcaattcatattagttggatggatcaaaaagtggtcctttaaaattaaaacttaagtttttatttggtacaccatacataaataaatctgacttggg |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
335805 |
agagcaattcatattagttggatggatcaaaaagtggtcctttaaaattaaaact-aagtttt-atttggtacaccatacataaataaatctgacttggg |
335708 |
T |
|
| Q |
220 |
cacaaatgtggtaagaaaaatggacataaatatgcatattagttggaccaaaagtgacccccttttccttttctgtgcccatcatgtgtgacaattaaag |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
335707 |
cacaaatgtggtaagaaaaatggacataaatatgcatattagttggaccaaaagtgacccccttttccttttctgtgcccatcatgtgtgacaattaaag |
335608 |
T |
|
| Q |
320 |
aatcactcaactagtttgtacactaacatttatttagattgca-gaggcaaaatgtgccccttgtttttt-actatgtcagttatttattatttatgctt |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
335607 |
aatcactcaactagtttgtacactaacatttatttagattgcaagaggcaaaatgtgccccttgtttttttactatgtcagttatttattatttatgctt |
335508 |
T |
|
| Q |
418 |
ctaataaaaacatcaacaacaccaccatcatcaactcaaataaagattctattactatgcatgcaattacaatgaagagtgtaaaaataatttggggcac |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
335507 |
ctaataaaaacatcaacaacaccaccatcatcaactcaaataaagattctattactatgcatgcaattacaatgaagagtgtaaaaataatttggggcac |
335408 |
T |
|
| Q |
518 |
agtgtagttgactgggatttttatgaatccacatgcaatcacattcacttacaagaattaccagtcagaattcacagaagcatgtgagcacgtgtgcata |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
335407 |
agtgtagttgactgggatttttatgaatccacatgcaatcacattcacttacaagaattaccagtcagaattcacagaagcatgtgagcacgtgtgcata |
335308 |
T |
|
| Q |
618 |
attttcatatgcgggcttccatatattcaaacacatgtttgcacgtgcacatgcacttctatctatacctctctcgtgtagtagtatactattattcttt |
717 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
335307 |
attttcatatgcgggcttccatatattcaaacacatgtttgcacgtgcacatgcacttctatctatacctctctcgtgtagtagtatactattattcttt |
335208 |
T |
|
| Q |
718 |
tcaactacaaaatgtacggtgtttatt |
744 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
335207 |
tcaactacaaaatgtacggtgtttatt |
335181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 500 - 558
Target Start/End: Original strand, 48013459 - 48013516
Alignment:
| Q |
500 |
aaaaataatttggggcacagtgtagttgactgggatttttatgaatccacatgcaatca |
558 |
Q |
| |
|
||||| ||||| |||||| ||| |||||||||||| |||||| |||||||||||||||| |
|
|
| T |
48013459 |
aaaaaaaatttagggcacggtgcagttgactggga-ttttattaatccacatgcaatca |
48013516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University