View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8089_low_11 (Length: 328)

Name: NF8089_low_11
Description: NF8089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8089_low_11
NF8089_low_11
[»] chr6 (4 HSPs)
chr6 (146-318)||(373172-373344)
chr6 (21-115)||(373047-373141)
chr6 (21-92)||(14321623-14321694)
chr6 (21-66)||(256758-256803)
[»] chr5 (2 HSPs)
chr5 (21-92)||(35583868-35583939)
chr5 (27-83)||(16311547-16311603)
[»] chr2 (3 HSPs)
chr2 (21-92)||(34544578-34544649)
chr2 (21-91)||(29657002-29657072)
chr2 (21-67)||(31601032-31601078)
[»] chr7 (3 HSPs)
chr7 (21-83)||(30999752-30999814)
chr7 (21-66)||(19440277-19440322)
chr7 (21-69)||(11472977-11473025)
[»] chr4 (3 HSPs)
chr4 (23-92)||(12075900-12075969)
chr4 (21-90)||(17113269-17113338)
chr4 (42-92)||(21957099-21957149)
[»] chr3 (1 HSPs)
chr3 (42-92)||(30905056-30905106)
[»] scaffold1322 (1 HSPs)
scaffold1322 (22-92)||(863-933)
[»] chr8 (2 HSPs)
chr8 (28-92)||(8545622-8545687)
chr8 (21-93)||(39379844-39379916)


Alignment Details
Target: chr6 (Bit Score: 161; Significance: 8e-86; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 146 - 318
Target Start/End: Original strand, 373172 - 373344
Alignment:
Q  146 actcaaacccgtcggaacggagataagatttgatttctcattccagttgagtatatgagagtatgatatggggatgagaaaagcaaaactcgccccactc 245  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  373172 actcaaacccgtcgggacggagataagatttgatttctcattccagttgagtatatgagagtatgatatggggatgagaaaagcaaaactcgccccactc 373271  T
Q  246 gacgtcctattgtcgtttctaatatcatgtgctatatcaaggcatgaaaaattgattaaaattgatgtccatc 318  Q
    |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||    
T  373272 gacgtcctattgtcgtttctaatatcatgtgctataacaaggcacgaaaaattgattaaaattgatgtccatc 373344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 21 - 115
Target Start/End: Original strand, 373047 - 373141
Alignment:
Q  21 gtcattgatcgtcatcatcggtttgttgaataatgcattacaacattgcgcacgtggctgaaatatactttttgttattaagaaaatattcattg 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  373047 gtcattgatcgtcatcatcggtttgttgaataatgcattacaacattgcgcacgtggctgaaatatacttttttttattaagaaaatattcattg 373141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 21 - 92
Target Start/End: Complemental strand, 14321694 - 14321623
Alignment:
Q  21 gtcattgatcgtcatcatcggtttgttgaataatgcattacaacattgcgcacgtggctgaaatatactttt 92  Q
    |||||||||||||||||||  ||| || |||| |||||||||||||||| | |  |||||||| ||||||||    
T  14321694 gtcattgatcgtcatcatctctttattcaatattgcattacaacattgcactcaaggctgaaaaatactttt 14321623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 66
Target Start/End: Original strand, 256758 - 256803
Alignment:
Q  21 gtcattgatcgtcatcatcggtttgttgaataatgcattacaacat 66  Q
    |||||||||||||||||||  |||| || |||||||||||||||||    
T  256758 gtcattgatcgtcatcatctatttgctggataatgcattacaacat 256803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 21 - 92
Target Start/End: Complemental strand, 35583939 - 35583868
Alignment:
Q  21 gtcattgatcgtcatcatcggtttgttgaataatgcattacaacattgcgcacgtggctgaaatatactttt 92  Q
    ||||| ||||||| |||||  ||||||| |||||||||||||||||||||| ||||||||||| ||||||||    
T  35583939 gtcatcgatcgtcgtcatctctttgttggataatgcattacaacattgcgctcgtggctgaaaaatactttt 35583868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 83
Target Start/End: Original strand, 16311547 - 16311603
Alignment:
Q  27 gatcgtcatcatcggtttgttgaataatgcattacaacattgcgcacgtggctgaaa 83  Q
    |||||||||||||  ||||||  ||||| |||||||||||||||| || ||||||||    
T  16311547 gatcgtcatcatctctttgtttgataattcattacaacattgcgctcggggctgaaa 16311603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 21 - 92
Target Start/End: Original strand, 34544578 - 34544649
Alignment:
Q  21 gtcattgatcgtcatcatcggtttgttgaataatgcattacaacattgcgcacgtggctgaaatatactttt 92  Q
    ||||||||||||| |||||  ||||||| |||||||||||||||||||||| || |||||||| ||||||||    
T  34544578 gtcattgatcgtcgtcatctctttgttggataatgcattacaacattgcgctcggggctgaaaaatactttt 34544649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 91
Target Start/End: Original strand, 29657002 - 29657072
Alignment:
Q  21 gtcattgatcgtcatcatcggtttgttgaataatgcattacaacattgcgcacgtggctgaaatatacttt 91  Q
    ||||| |||||||||||||  |||  || |||||||||||||||||||||| || |||||||| |||||||    
T  29657002 gtcatcgatcgtcatcatctctttcctggataatgcattacaacattgcgctcggggctgaaaaatacttt 29657072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 67
Target Start/End: Original strand, 31601032 - 31601078
Alignment:
Q  21 gtcattgatcgtcatcatcggtttgttgaataatgcattacaacatt 67  Q
    |||||||||||||||||||  ||||||| ||||||||||||||||||    
T  31601032 gtcattgatcgtcatcatctctttgttggataatgcattacaacatt 31601078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 21 - 83
Target Start/End: Complemental strand, 30999814 - 30999752
Alignment:
Q  21 gtcattgatcgtcatcatcggtttgttgaataatgcattacaacattgcgcacgtggctgaaa 83  Q
    |||||||||||||||||||  ||||||| ||||| ||||||||||||||||| ||||||||||    
T  30999814 gtcattgatcgtcatcatctttttgttggataatacattacaacattgcgcaagtggctgaaa 30999752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 66
Target Start/End: Original strand, 19440277 - 19440322
Alignment:
Q  21 gtcattgatcgtcatcatcggtttgttgaataatgcattacaacat 66  Q
    |||||||||||||||||||  |||| || |||||||||||||||||    
T  19440277 gtcattgatcgtcatcatctatttgctggataatgcattacaacat 19440322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 69
Target Start/End: Original strand, 11472977 - 11473025
Alignment:
Q  21 gtcattgatcgtcatcatcggtttgttgaataatgcattacaacattgc 69  Q
    ||||| |||||||||||||  ||||||| ||||| ||||||||||||||    
T  11472977 gtcatcgatcgtcatcatctctttgttggataatacattacaacattgc 11473025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 92
Target Start/End: Original strand, 12075900 - 12075969
Alignment:
Q  23 cattgatcgtcatcatcggtttgttgaataatgcattacaacattgcgcacgtggctgaaatatactttt 92  Q
    |||||||||||||||||  ||||||| |||||||||||||||| ||||| || || ||||| ||||||||    
T  12075900 cattgatcgtcatcatctctttgttggataatgcattacaacaatgcgctcgaggttgaaaaatactttt 12075969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 17113269 - 17113338
Alignment:
Q  21 gtcattgatcgtcatcatcggtttgttgaataatgcattacaacattgcgcacgtggctgaaatatactt 90  Q
    ||||||||||||||| |||  ||||||||||||||||||||||||||| || || |||| ||| ||||||    
T  17113269 gtcattgatcgtcataatctctttgttgaataatgcattacaacattgtgctcggggctaaaaaatactt 17113338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 92
Target Start/End: Original strand, 21957099 - 21957149
Alignment:
Q  42 tttgttgaataatgcattacaacattgcgcacgtggctgaaatatactttt 92  Q
    ||||||| |||||||||||||||||||| || | |||||||| ||||||||    
T  21957099 tttgttggataatgcattacaacattgcacatgaggctgaaaaatactttt 21957149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 42 - 92
Target Start/End: Original strand, 30905056 - 30905106
Alignment:
Q  42 tttgttgaataatgcattacaacattgcgcacgtggctgaaatatactttt 92  Q
    |||||||||||||||||||||||||||||| || || ||||| ||||||||    
T  30905056 tttgttgaataatgcattacaacattgcgctcggggttgaaaaatactttt 30905106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1322 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold1322
Description:

Target: scaffold1322; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 92
Target Start/End: Complemental strand, 933 - 863
Alignment:
Q  22 tcattgatcgtcatcatcggtttgttgaataatgcattacaacattgcgcacgtggctgaaatatactttt 92  Q
    |||||||||||| |||||  ||| ||||||| |||||||||||||||| | |  |||||||| ||||||||    
T  933 tcattgatcgtcgtcatctctttattgaatattgcattacaacattgcactcaaggctgaaaaatactttt 863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 92
Target Start/End: Original strand, 8545622 - 8545687
Alignment:
Q  28 atcgtcatcatcggtttgttgaataatgcattacaacattgcgcac-gtggctgaaatatactttt 92  Q
    ||||||||||||  ||||||| |||||||||||||||||| ||| | | |||||||| ||||||||    
T  8545622 atcgtcatcatctctttgttggataatgcattacaacattacgctcgggggctgaaaaatactttt 8545687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 93
Target Start/End: Original strand, 39379844 - 39379916
Alignment:
Q  21 gtcattgatcgtcatcatcggtttgttgaataatgcattacaacattgcgcacgtggctgaaatatacttttt 93  Q
    ||||||||| | |||||||  ||||||| ||||||||||||||||||| |  || |||||||| ||| |||||    
T  39379844 gtcattgattgacatcatctctttgttggataatgcattacaacattgtgttcgaggctgaaaaatatttttt 39379916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University