View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8089_low_2 (Length: 712)
Name: NF8089_low_2
Description: NF8089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8089_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 524; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 524; E-Value: 0
Query Start/End: Original strand, 125 - 696
Target Start/End: Complemental strand, 12629799 - 12629228
Alignment:
| Q |
125 |
ttctccctagaaggatttaaactgctgacatcatgtcctcgcaacaatgcttgataatgtaaagtacaagtaaatacaactgatgcagtcaaaattttga |
224 |
Q |
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| T |
12629799 |
ttctccctagaaggttttaaattgtcgacatcatgtcctcggcacaatgcttgataatgtaaagtacaagtaaatacaactgatgcagtcaaaattttga |
12629700 |
T |
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| Q |
225 |
tgacagtgcagagtgcacgttgcaattcaatcaaaaccttgattacaacagaatctgatagccacaatgcaaccgcgacaaaatcgctactgcaatttaa |
324 |
Q |
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| T |
12629699 |
tgacagtgcagagtgcacgttgcaattcaatcaaaaccttgattacaacagaatctgatggccacaatgcaaccgcgacaaaatcgctacttcaatttaa |
12629600 |
T |
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| Q |
325 |
atccttcttagagaatatatgtgaaaaattgacactactaaagagcagagagagtgaacaactttccacgctgcttaggctccacgaatattgcatcctc |
424 |
Q |
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| T |
12629599 |
aaccttcttagagaatatatgtgaaaaattgacactactaaagaacagagagagtgaacaactttccacgctgcttaggctccacgaatattgcatcctc |
12629500 |
T |
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| Q |
425 |
atcttcttcagaaaccaagatgcactgttaaaacataattatcatcatcaaaagctattaaacttagttcttcaatacactgcgaaaaatgatgattaac |
524 |
Q |
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| T |
12629499 |
atcttcttcagaaaccaagatgcactgttaaaacataattatcatcatcaaaagctattaaacttagttcttcaatacactgcgaaaaatgatgattaac |
12629400 |
T |
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| Q |
525 |
cacttactgttctaccactgcttatcaaagccttgcagaacacctcattggaaagaacatccagcttcttctgttcttcacccttcattccaaacaataa |
624 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12629399 |
cacttactgttctaccactgcttatcaaagccttgcagaacacctcattggaaagaacatccagcttcttctgttcttcacccttcattccaaacaataa |
12629300 |
T |
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| Q |
625 |
agcaaagtaaattaaaaatgacaccaaatagttaatgtgtgtttggtttcaatagcgagtgtccaaattgat |
696 |
Q |
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| T |
12629299 |
agcaaagtaaattaaaaatgaaaccaaatagttaatatgtgtttggtttcaatagcgagtgtccaaattgat |
12629228 |
T |
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