View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8089_low_5 (Length: 430)
Name: NF8089_low_5
Description: NF8089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8089_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 10 - 419
Target Start/End: Complemental strand, 47117170 - 47116765
Alignment:
| Q |
10 |
gcagaacctgtggaacctgcacgagcatgtcggttcaatggcgacatcatcaccggcgaagatggtgatgttggcgttcccgttgagctttgttgcctat |
109 |
Q |
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| T |
47117170 |
gcagaacctgtggaacctgcacgagcatgtcgattcaatggcgacatcatcaccggtgaagacggtgatgttggcgttcccgttgagctttgttgcctat |
47117071 |
T |
|
| Q |
110 |
catacattctccgcctatccatctacaaaacaagaaattaaaaataatcgttaaaaggtgatcgatcgagtcattgatacgttgatattgcttaccttgc |
209 |
Q |
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| T |
47117070 |
catacattctccgcctatccatctacaaaacaagaaattaaaaataatcgttaaaaggtgatcga----gtcattgatacgttgatattgcttaccttgc |
47116975 |
T |
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| Q |
210 |
tttgtgatttgatcgttaaaaggtatgaatatttatctccttgaattgaaactaaagatataaaagaaattggttattgaatatctttgataaaatataa |
309 |
Q |
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| T |
47116974 |
tttgtgatttgatcgttaaaaggtatgaatatttatctccttgaattgaaactaaagatataaaagaaattggttattgaatatctttgataaaatataa |
47116875 |
T |
|
| Q |
310 |
ctattgtaattacctgagaagcgatgaaacaaaacaatgtcagnnnnnnngagatatcataaggaaatgaaataacaagggtatgaggaagcttggagtg |
409 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47116874 |
ctattgtaattacctgagaagcgatgaaacaaaacaatgtcagaaaaaaagagatatcataaggaaatgaaataacaagggtatgaggaagcttggagtg |
47116775 |
T |
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| Q |
410 |
atgtccatct |
419 |
Q |
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| T |
47116774 |
gtgtccatct |
47116765 |
T |
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