View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8089_low_6 (Length: 379)
Name: NF8089_low_6
Description: NF8089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8089_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 301; Significance: 1e-169; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 18 - 371
Target Start/End: Original strand, 47909990 - 47910349
Alignment:
| Q |
18 |
ctcataacattaaataattaatttaaggatgnnnnnnnnn--aataataacactaaatatgtataagttagttgaatgtacctataatttgagttctgag |
115 |
Q |
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| T |
47909990 |
ctcataacattaaataattaatttaaggatgattttttttttaataataacattaaatatgtataagttagttgaatgtacctataatttgagttctgag |
47910089 |
T |
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| Q |
116 |
ggagtatataacttggaattaagtaggaaaaattaggtgtgcatggctaac----tagactttgaagtagatcactaaccgtccatcctgcttcaacact |
211 |
Q |
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| T |
47910090 |
ggagtatataacttggaattaagtaggaaaaattaggtgtgcatggctaacgttctagactttgaagtagatcactaaccgtccatcctgcttcaacact |
47910189 |
T |
|
| Q |
212 |
ttctaaattatctccattggtagccttaagccacatttgagcagtagtgaaatcttctggtttttcaacctttggattccatacgttaatattcgcttgg |
311 |
Q |
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| T |
47910190 |
ttctaaattatctccattggtagccttaagccacatttgagcagtagtgaaatcttctggtttttcaacctttggattccatacgttaatattcgcttgg |
47910289 |
T |
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| Q |
312 |
gcgcctataaaattgaatgcgtatgccataagtaatgcatcctgcacaatcacaccacca |
371 |
Q |
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| T |
47910290 |
gcgcctataaaattgaatgcgtatgccataagtaatgcatcctgcacaatcacaccacca |
47910349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 185 - 367
Target Start/End: Original strand, 47920769 - 47920954
Alignment:
| Q |
185 |
actaaccgtccatcctgcttcaacactttctaaattatct---ccattggtagccttaagccacatttgagcagtagtgaaatcttctggtttttcaacc |
281 |
Q |
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| T |
47920769 |
actaaccgtccagcctgcttcgatgctttcaaaattatcaggaccattggcagccttaagccatatttgagcagtagtaaaatcttctggtttttcaact |
47920868 |
T |
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| Q |
282 |
tttggattccatacgttaatattcgcttgggcgcctataaaattgaatgcgtatgccataagtaatgcatcctgcacaatcacacc |
367 |
Q |
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| T |
47920869 |
tttggattccacacattaatattcgcttgtgcccctataaattggaatgcatatgccacaagaagtgcatcctgcacgatcacacc |
47920954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 185 - 325
Target Start/End: Original strand, 47929104 - 47929244
Alignment:
| Q |
185 |
actaaccgtccatcctgcttcaacactttctaaattatctccattggtagccttaagccacatttgagcagtagtgaaatcttctggtttttcaaccttt |
284 |
Q |
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| T |
47929104 |
actaaccgtccagcctgcttcaatgctttcgaaattatttccattatcagccttaagccacatttgagcggtagtgaaatcttctggtttgtcaaccttt |
47929203 |
T |
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| Q |
285 |
ggattccatacgttaatattcgcttgggcgcctataaaatt |
325 |
Q |
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| T |
47929204 |
ggattccaaacgttgatatttgcttgtgcgcctatataatt |
47929244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 181 - 329
Target Start/End: Original strand, 47947420 - 47947568
Alignment:
| Q |
181 |
gatcactaaccgtccatcctgcttcaacactttctaaattatctccattggtagccttaagccacatttgagcagtagtgaaatcttctggtttttcaac |
280 |
Q |
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|||||| |||| |||| || |||||||| ||| | ||||| || |||||| |||||||||||||||||||||| ||||||||||||||||||| |||||| |
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| T |
47947420 |
gatcacgaaccatccagccagcttcaacgcttgcaaaattttcaccattgttagccttaagccacatttgagccgtagtgaaatcttctggttgttcaac |
47947519 |
T |
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| Q |
281 |
ctttggattccatacgttaatattcgcttgggcgcctataaaattgaat |
329 |
Q |
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| T |
47947520 |
atttggattccatacgttgatgtttgcttgtgcgcctataaaattgaat |
47947568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 225 - 326
Target Start/End: Original strand, 47941545 - 47941646
Alignment:
| Q |
225 |
ccattggtagccttaagccacatttgagcagtagtgaaatcttctggtttttcaacctttggattccatacgttaatattcgcttgggcgcctataaaat |
324 |
Q |
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||||||| |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| || ||||||||||||||| |
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| T |
47941545 |
ccattggcagccttaagccatatttgagcagtagtgaaatcttctggtcgttcaacctttggattccatatattaatatttcctagggcgcctataaaat |
47941644 |
T |
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| Q |
325 |
tg |
326 |
Q |
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|| |
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| T |
47941645 |
tg |
47941646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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