View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8089_low_7 (Length: 379)
Name: NF8089_low_7
Description: NF8089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8089_low_7 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 379
Target Start/End: Original strand, 32720267 - 32720645
Alignment:
| Q |
1 |
ttgtaacaaagaaataaagttacgcttatcttgcacttcataaaacaatcttgtgatctacatgacttgtcaagcaagaaactacacaagtgaaggaacc |
100 |
Q |
| |
|
|||||||||| |||||||||||||||| |||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32720267 |
ttgtaacaaataaataaagttacgcttgtcttgcacttcataaaacaaccttgtgacctacaggacttgtcaagcaagaaactacacaagtgaaggaacc |
32720366 |
T |
|
| Q |
101 |
acctttttgtctcacactttaagaaacaactatgtggcccatatgtctttacaaacaaaaaagtcgtcttgtatttccactttcttgggaaacaagtagc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
32720367 |
acctttttgtctcacactttaagaaacaactatgtggcccatatgtctttacaaacaaaaaagtcgtcttgtatttccactttcttgggaaacatgtagc |
32720466 |
T |
|
| Q |
201 |
accttcaaatttcttcaacatgtatgttttcaaccaacaccagcgacactctccgacctagtcttgtaacccgttcgagcttgaatgcaaggttggatcc |
300 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32720467 |
accttcaaatttcttcaaaatgtatgttttcaaccaacatcagcgacactctccgacctagtcttgtaacccgttcgagcttgaatgcaaggttggatct |
32720566 |
T |
|
| Q |
301 |
tacaaggtaaaaaaggaaagcaggaacaacattagacgacaaaacaaaaatgcaactgaagcggaggccaagtttgagt |
379 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
32720567 |
tacaaggtaaaaaaggaaagcaagaacaacattagacgacaaaacaaaaatgcaactgaaccggaggccaagtttgagt |
32720645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 65 - 129
Target Start/End: Original strand, 18674097 - 18674161
Alignment:
| Q |
65 |
acttgtcaagcaagaaactacacaagtgaaggaaccacctttttgtctcacactttaagaaacaa |
129 |
Q |
| |
|
||||||||| ||| ||| || ||||||||||||||||||| ||| ||| |||||||||||||||| |
|
|
| T |
18674097 |
acttgtcaaacaaaaaaataaacaagtgaaggaaccacctgtttatcttacactttaagaaacaa |
18674161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 64 - 127
Target Start/End: Original strand, 18777446 - 18777509
Alignment:
| Q |
64 |
gacttgtcaagcaagaaactacacaagtgaaggaaccacctttttgtctcacactttaagaaac |
127 |
Q |
| |
|
|||||||||| |||||| || |||||||||||||||||| | ||||||| ||||| ||||||| |
|
|
| T |
18777446 |
gacttgtcaaataagaaagtaaacaagtgaaggaaccaccatcttgtctcgcacttcaagaaac |
18777509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 105
Target Start/End: Complemental strand, 10150440 - 10150365
Alignment:
| Q |
29 |
tcttgcacttcataaaacaatcttgtgatctacatgacttgtcaagcaagaaactacacaagtgaaggaaccacctt |
105 |
Q |
| |
|
|||||| ||||| |||||| ||||||| ||||| |||||||||||||||||| | |||| ||||||||||||||| |
|
|
| T |
10150440 |
tcttgcgcttcaagaaacaa-cttgtgacctacaagacttgtcaagcaagaaaacaaacaattgaaggaaccacctt |
10150365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 200
Target Start/End: Complemental strand, 3426103 - 3426071
Alignment:
| Q |
168 |
cttgtatttccactttcttgggaaacaagtagc |
200 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |
|
|
| T |
3426103 |
cttgtatttccactttcttgagaaacaagtagc |
3426071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 98
Target Start/End: Complemental strand, 45123127 - 45123058
Alignment:
| Q |
29 |
tcttgcacttcataaaacaatcttgtgatctacatgacttgtcaagcaagaaactacacaagtgaaggaa |
98 |
Q |
| |
|
|||||||||||| ||||||| |||| | ||||| |||||||||||||| ||| || ||||||| ||||| |
|
|
| T |
45123127 |
tcttgcacttcaagaaacaatattgtcacctacaagacttgtcaagcaataaagtaaacaagtggaggaa |
45123058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 94
Target Start/End: Complemental strand, 6050074 - 6050022
Alignment:
| Q |
42 |
aaaacaatcttgtgatctacatgacttgtcaagcaagaaactacacaagtgaa |
94 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||||||| || ||||||||| |
|
|
| T |
6050074 |
aaaaaaatcttgtgatctaagagacttgtcaagcaagaaagtaaacaagtgaa |
6050022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University