View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8090_high_2 (Length: 372)
Name: NF8090_high_2
Description: NF8090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8090_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 7 - 352
Target Start/End: Complemental strand, 48891372 - 48891035
Alignment:
| Q |
7 |
tttggtggttcacatttatttcgaaaaggacatccgtcattacatccaagtgatatggttgacatgtatttcgattatttaaaatgagcgcgcatttctg |
106 |
Q |
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| T |
48891372 |
tttggtggttcacatttatttcgaaaaggacatccgtcattacatccaagtgatatggttgacatgtatttcgattatttaaaatga--gcgcatttctg |
48891275 |
T |
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| Q |
107 |
tgnnnnnnngcaacaaagaaatgtctcatgaacacttactagatctcgtcaaacatttttcttgacggtggctaaaatgtctcaaaacctaattcc-nnn |
205 |
Q |
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| T |
48891274 |
tgtttttttgcaacagagaaatgtctcatgaacacttactagatctcgtcaaacatttttcttgacggtggctaaaatgtctcaaaacctaattcctttt |
48891175 |
T |
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| Q |
206 |
nnnnaattttataacgtcattctttcgactttcccttatcacatacatcttataatttaattgaaatttattcttttcttgtctccaagtatttaacctc |
305 |
Q |
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| T |
48891174 |
ttttgattttataacgtcattctttcgactttcccttatca-------ctaagtagttaattgaaatttatccttttcttatctccaagtatttaacctc |
48891082 |
T |
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| Q |
306 |
ctctttatttcttctctagactctctaagtacaactatgtcatgatg |
352 |
Q |
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| T |
48891081 |
ctctttatttcttctctagactctctaaatacaactatgtcatgatg |
48891035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 7 - 97
Target Start/End: Original strand, 34559415 - 34559505
Alignment:
| Q |
7 |
tttggtggttcacatttatttcgaaaaggacatccgtcattacatccaagtgatatggttgacatgtatttcgattatttaaaatgagcgc |
97 |
Q |
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| T |
34559415 |
tttggtggttcatatttatttcgaaaaggatattcgccactacatccaagtgatctggttgacatgtatttcaactatttaaaatgagcgc |
34559505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 14 - 183
Target Start/End: Original strand, 34558578 - 34558747
Alignment:
| Q |
14 |
gttcacatttatttcgaaaaggacatccgtcattacatccaagtgatatggttgacatgtatttcgattatttaaaatgagcgcgcatttc-tgtgnnnn |
112 |
Q |
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| T |
34558578 |
gttcacatttatctcgaaaaggacattac-cattacacccaagtgatctggttgatatgtatttcgattatttaaaatgaacgcaattctcgtgtgtttt |
34558676 |
T |
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| Q |
113 |
nnngcaacaaagaaatgtctcatgaacacttactagatctcgtcaaacatttttcttgacggtggctaaaa |
183 |
Q |
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| T |
34558677 |
tttgcaacaaagaaatgtctcaagaacatttacttgatctcgtcaaacttttctcttgacagtggccaaaa |
34558747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 7 - 240
Target Start/End: Original strand, 34559785 - 34560014
Alignment:
| Q |
7 |
tttggtggttcacatttatttcgaaaaggacatccgtcattacatccaagtgatatggttgacatgtatttcgattatttaaaatgagcgcgcatttct- |
105 |
Q |
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| T |
34559785 |
tttggtgcttcacatttatttcgaaaagggcatctc-cattacatccaagtgatcttgttaacatgtatttcaattatttaaaatga--tcacaattctc |
34559881 |
T |
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| Q |
106 |
gtgnnnnnnngcaacaaagaaatgtctcatgaacacttactagatctcgtcaaacatttttcttgacggtggctaaaatgtctcaaaacctaattccnnn |
205 |
Q |
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| T |
34559882 |
gtgtttttttgcaacaacgaaatgtttgatgaacatttacttgatcatgtcaaacttttttcttgatggttgctaaaa-gtctagaaacctaattccttt |
34559980 |
T |
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| Q |
206 |
nnnnaattttataacgtcattctttcgactttccc |
240 |
Q |
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| T |
34559981 |
gttg-attttataacgtcattcttttaactttccc |
34560014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 46 - 183
Target Start/End: Original strand, 34559034 - 34559170
Alignment:
| Q |
46 |
ttacatccaagtgatatggttgacatgtatttcgattatttaaaatgagcgcgcatttct-gtgnnnnnnngcaacaaagaaatgtctcatgaacactta |
144 |
Q |
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| T |
34559034 |
ttacatccaagtaatctggttaacatgtatttcaattatttaaaatgagtgc--aattctcgtgtttttttggaacaaagaaatgtctcatgaacattta |
34559131 |
T |
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| Q |
145 |
ctagatctcgtcaaacatttttcttgacggtggctaaaa |
183 |
Q |
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| T |
34559132 |
cttgatcccgtcaaacttttctcttgatagtggctaaaa |
34559170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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