View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8090_high_4 (Length: 241)
Name: NF8090_high_4
Description: NF8090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8090_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 9 - 215
Target Start/End: Original strand, 24506452 - 24506654
Alignment:
| Q |
9 |
gtgagatgaatgtaaattgtgcaggttttgaagcatgcgctaggaaggattaattttgtgttggcatcaagtgccttattcttctctgatgcatgcagtc |
108 |
Q |
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| T |
24506452 |
gtgagttgaatgtaaattgtgcaggttttgaagcatgcgctaggaaggattaattttgtgttggcatcaagtgccttattcttctctgatgta----gtc |
24506547 |
T |
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| Q |
109 |
tcatggtaagttgtcttgaaggattcattctctgattgaagttcggtaaagagagaaaggttattcaaagcatgttgaaactgctccctgaaacccaaat |
208 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24506548 |
tcatggtaagttgtcttgaacgattcattctctgattgaagttcggtaaagagagaaaggttattcaaagcatgttgaaactgctccctgaaacccaaat |
24506647 |
T |
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| Q |
209 |
agtccat |
215 |
Q |
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||||||| |
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| T |
24506648 |
agtccat |
24506654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 44
Target Start/End: Original strand, 29082251 - 29082286
Alignment:
| Q |
9 |
gtgagatgaatgtaaattgtgcaggttttgaagcat |
44 |
Q |
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||||| |||||||||||||||||||||||||||||| |
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| T |
29082251 |
gtgagttgaatgtaaattgtgcaggttttgaagcat |
29082286 |
T |
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