View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8090_high_6 (Length: 207)
Name: NF8090_high_6
Description: NF8090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8090_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 92; Significance: 7e-45; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 16 - 176
Target Start/End: Original strand, 3713427 - 3713586
Alignment:
| Q |
16 |
atcacaaccctcttcccaacgca--cactttaacttattttattaattcaatcaattccttaatctagagagaatttcaaagctaaacaaaatgaagaga |
113 |
Q |
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| T |
3713427 |
atcacaaccctcttcccaacgcaaacacttcaacttattttattaattcaatcaattccttaatctagagagaatttcaaagcaaaacaaaatgaagaga |
3713526 |
T |
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| Q |
114 |
gnnnnnnnnttaaaacaagcaaaacgaagaacagacggatgaagagtaggaattgccgatctg |
176 |
Q |
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| T |
3713527 |
---aaaaaattaaaataagcaaaacgaataacagacggaagaagagtaagaattgcagatctg |
3713586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 68; Significance: 1e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 16 - 175
Target Start/End: Original strand, 48462505 - 48462668
Alignment:
| Q |
16 |
atcacaaccctcttcccaacgca--cactttaacttattttattaattcaatcaattccttaatctagagagaatttcaaagctaaacaaaatgaagaga |
113 |
Q |
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||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||||||||||| | |
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| T |
48462505 |
atcacaacccttttcccaacgcagacacttcaacttattttattaattcaatcaattccttaatttagagagaatttcaaaacaaaacaaaatgaagaaa |
48462604 |
T |
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| Q |
114 |
gnnnnnnnnttaaaacaagc-----aaaacgaagaacagacggatgaagagtaggaattgccgatct |
175 |
Q |
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| T |
48462605 |
---aaaaaattaaaacaagcaaattaaagcgaagaacagacggatgaagagtaagaattgcagatct |
48462668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 38 - 86
Target Start/End: Original strand, 11570835 - 11570883
Alignment:
| Q |
38 |
acactttaacttattttattaattcaatcaattccttaatctagagaga |
86 |
Q |
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|||||| ||||||||||||| |||||||||||||||||||||||||||| |
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| T |
11570835 |
acacttcaacttattttattcattcaatcaattccttaatctagagaga |
11570883 |
T |
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