View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8090_low_1 (Length: 468)
Name: NF8090_low_1
Description: NF8090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8090_low_1 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 451; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 14 - 468
Target Start/End: Original strand, 32844266 - 32844720
Alignment:
| Q |
14 |
ataatactctgaagttgcttttgcaactgtgcttttatttggtggttagattcgacatttctacatacattttccttctcagccaagagtctcaacctcc |
113 |
Q |
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| T |
32844266 |
ataatactctgaagttgcttttgcaactgtgcttttatttggtggttagattcgacatttctacatacattttccttctcagccaagagtctcaacctcc |
32844365 |
T |
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| Q |
114 |
tcgcttcagcatcagctatctcagaattacacgagttccttttgttgcttttaaaatccatgaaagaggacctcagctgaaaaccagaaacagaaccact |
213 |
Q |
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| T |
32844366 |
tcgcttcagcatcagctatctcagaattacacgagttccttttgttgcttttaaaatccatgaaagaggacctcagctgaaaaccagaaacagaaccact |
32844465 |
T |
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| Q |
214 |
ttcaaacaattaacaatccaccagattgatcataatctaacattgttactattaatttcatacaaattgatagctaggaatgctgaaccatgatcaaaag |
313 |
Q |
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| T |
32844466 |
ttcaaacaattaacaatccaccagattgatcataatctaacattgttactattaatttcatacaaattgatagctaggaatgctgaaccatgatcaaaag |
32844565 |
T |
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| Q |
314 |
aagcacatatatagcataccataaacatacatgtcaatttctgttttactttcaaattttaatcatgactttgtacaaaaacacccggctgctataaata |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32844566 |
aagcacatatatagcataccataaacatacatgtcaatatctgttttactttcaaattttaatcatgactttgtacaaaaacacccggctgctataaata |
32844665 |
T |
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| Q |
414 |
gtataagaaacaccggcacataaatggacaacagatacacgacactaacaccgag |
468 |
Q |
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| T |
32844666 |
gtataagaaacaccggcacataaatggacaacagatacacgacactaacaccgag |
32844720 |
T |
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