View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8090_low_7 (Length: 226)
Name: NF8090_low_7
Description: NF8090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8090_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 149; Significance: 7e-79; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 15847232 - 15847439
Alignment:
| Q |
1 |
tggaaaaatagttgataaaactagctgcatataggcaatttataaagtcagttacatgtattatggaccagcatgatcagcatatctattatgtggttat |
100 |
Q |
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| T |
15847232 |
tggaaaaatagttgataaaactagctacatataggcaatgaataaagtcagttacatgtattatgtaccagcatgagcaacatatctattatgtggttga |
15847331 |
T |
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| Q |
101 |
tttacctttgcagcaaattcaatgaaagtcattccctgtacaacataacttcgttcgtaacacacatcttcaacaagaagatcctaccaattggccaaaa |
200 |
Q |
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| T |
15847332 |
tt-acctttgcagcaaattcaatgaaagccattccctgtacaacataacttcgtccgtaacgcgcagcttcaacaagaagatcctaccaattggccaaaa |
15847430 |
T |
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| Q |
201 |
atcaacagt |
209 |
Q |
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||||||||| |
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| T |
15847431 |
atcaacagt |
15847439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 102 - 207
Target Start/End: Complemental strand, 10702673 - 10702568
Alignment:
| Q |
102 |
ttacctttgcagcaaattcaatgaaagtcattccctgtacaacataacttcgttcgtaacacacatcttcaacaagaagatcctaccaattggccaaaaa |
201 |
Q |
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||||||||||| ||||||||||||||| ||| | ||| || || |||||||| ||||| | | |||||||||||||||||| |||||||| ||||| |
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| T |
10702673 |
ttacctttgcatcaaattcaatgaaagccatgcgttgttcagcaaaacttcgtctgtaacccgcggcttcaacaagaagatcctgtcaattggcaaaaaa |
10702574 |
T |
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| Q |
202 |
tcaaca |
207 |
Q |
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| T |
10702573 |
tcaaca |
10702568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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