View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8091_high_1 (Length: 767)

Name: NF8091_high_1
Description: NF8091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8091_high_1
NF8091_high_1
[»] chr3 (7 HSPs)
chr3 (275-751)||(52624374-52624837)
chr3 (78-277)||(52616572-52616760)
chr3 (79-226)||(52624144-52624291)
chr3 (275-415)||(52616808-52616948)
chr3 (16-87)||(52623972-52624043)
chr3 (407-439)||(52617006-52617038)
chr3 (248-277)||(52624297-52624326)


Alignment Details
Target: chr3 (Bit Score: 403; Significance: 0; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 275 - 751
Target Start/End: Original strand, 52624374 - 52624837
Alignment:
Q  275 caataatccaactccatttcaatcaataatcttcagatagcaacacctcaactaccctcttgcacaattagcacatgcaccacctatggaagtgaaaaag 374  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52624374 caataacccaactccatttcaatcaataatcttcagatagcaacacctcaactaccctcttgcacaattagcacatgcaccacctatggaagtgaaaaag 52624473  T
Q  375 aagaaggnnnnnnncacctgtttctaattctttaattatttatcatttttacacttgtatcattcattctgagtttatttcgtttgctgcattacatgtc 474  Q
    |||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||    
T  52624474 aagaaggaaaaaaacacctgtttctaattctttaattatttatcatttttacacttgtatcattc----tgagtttatttcgtttgctgcattacatgtc 52624569  T
Q  475 atccttagtaatgacattggaaggttcaaaatgaaatattcgctggcctgttgctaagattcgttgagggtcgaattgcatcttcatggcattgaattgg 574  Q
    |||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52624570 atccttagtaatgac---------ttcaaaatgaaatattcgctggcctgttgctaagattcgttgagggtcgaattgcatcttcatggcattgaattgg 52624660  T
Q  575 gtccatttatctccaaagtggtccatccactcctgcattgttgtgtaatggggtaggtactgtttaacccctatcttcgaatcatgacagaatcccagga 674  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52624661 gtccatttatctccaaagtggtccatccactcctgcattgttgtgtaatggggtaggtactgtttaacccctatcttcgaatcatgacagaatcccagga 52624760  T
Q  675 tctgacggttctgattagtcaggtgctccagtgtctcagcatccaaagctgatctcagaaatgccaccaggtaaaac 751  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52624761 tctgacggttctgattagtcaggtgctccagtgtctcagcatccaaagctgatctcagaaatgccaccaggtaaaac 52624837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 149; E-Value: 3e-78
Query Start/End: Original strand, 78 - 277
Target Start/End: Original strand, 52616572 - 52616760
Alignment:
Q  78 caatttataggattaaaattgtaaacaggaaagatggcaaacttccaaagaaatggacactggaaacaaacagatgcttgtatgtggataagacaacaaa 177  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    | ||||||||||||||||||||||||||    
T  52616572 caatttaaaggattaaaattgtaaacaggaaagatggcaaacttccaaagaaatggacactggaaaca----gctgcttgtatgtggataagacaacaaa 52616667  T
Q  178 atcagacgggtggtcgggatcacgggcgctgcactgagacatgtcatgtgtattgtcatctccccttccccccaaaaaggccccacgtctcttagatcaa 277  Q
    ||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||    
T  52616668 atcagacgggtggtcgggatcacgggcgctgcactgagacatgtca-------tgtcatctccccttccccccaaaaaggccccacgtctcttagatcaa 52616760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 140; E-Value: 6e-73
Query Start/End: Original strand, 79 - 226
Target Start/End: Original strand, 52624144 - 52624291
Alignment:
Q  79 aatttataggattaaaattgtaaacaggaaagatggcaaacttccaaagaaatggacactggaaacaaacagatgcttgtatgtggataagacaacaaaa 178  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  52624144 aatttaaaggattaaaattgtaaacaggaaagatggcaaacttccaaagaaatggacactggaaacaaacagctgcttgtatgtggataagacaacaaaa 52624243  T
Q  179 tcagacgggtggtcgggatcacgggcgctgcactgagacatgtcatgt 226  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  52624244 tcagacgggtggtcgggatcacgggcgctgcactgagacatgtcatgt 52624291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 275 - 415
Target Start/End: Original strand, 52616808 - 52616948
Alignment:
Q  275 caataatccaactccatttcaatcaataatcttcagatagcaacacctcaactaccctcttgcacaattagcacatgcaccacctatggaagtgaaaaag 374  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52616808 caataacccaactccatttcaatcaataatcttcagatagcaacacctcaactaccctcttgcacaattagcacatgcaccacctatggaagtgaaaaag 52616907  T
Q  375 aagaaggnnnnnnncacctgtttctaattctttaattattt 415  Q
    |||||||       |||||||||||||||||||||||||||    
T  52616908 aagaaggaaaaaaacacctgtttctaattctttaattattt 52616948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 52623972 - 52624043
Alignment:
Q  16 acatcagattttgtctagattgatcttaacactttgaaaaagaaatcgaagaaaaactcaaacaatttatag 87  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52623972 acatcagattttgtctagattgatcttaacactttgaaaaagaaatcgaagaaaaactcaaacaatttatag 52624043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 407 - 439
Target Start/End: Original strand, 52617006 - 52617038
Alignment:
Q  407 taattatttatcatttttacacttgtatcattc 439  Q
    |||||||||||||||||||||||||||||||||    
T  52617006 taattatttatcatttttacacttgtatcattc 52617038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 248 - 277
Target Start/End: Original strand, 52624297 - 52624326
Alignment:
Q  248 cccaaaaaggccccacgtctcttagatcaa 277  Q
    ||||||||||||||||||||||||||||||    
T  52624297 cccaaaaaggccccacgtctcttagatcaa 52624326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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