View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8091_high_13 (Length: 423)
Name: NF8091_high_13
Description: NF8091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8091_high_13 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 1 - 423
Target Start/End: Complemental strand, 8173820 - 8173398
Alignment:
| Q |
1 |
cattccgctttacactagaggctccactatcattgcagctttggatgaatctttgttggagcatgatgaactgttacgcgttctcatagccaatttgtta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| ||||||||||||| |
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| T |
8173820 |
cattccgctttacactagaggctccactatcattgcagctttggatgaatcttttttggagcatgatgaactgttatgcgttctcaaagccaatttgtta |
8173721 |
T |
|
| Q |
101 |
gctgctcaacacagatggttcagcaggccaatgcacattgtcgtgacttacagtttgatgtaggagacttgatactggttcgtttaaagcctcaccgaca |
200 |
Q |
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||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
8173720 |
actgctcaacccagatggttcagcaggccaatgcacactgtcgtgacttacagtttgatgtaggagacttggtactggttcgtttaaagcctcaccgaca |
8173621 |
T |
|
| Q |
201 |
gatctaagttcgacaacaacaccaacagaaactatcgaagaaattttatgtgcctcttgagatcctcgaatgcattttcaaagtggcttaccgacttcag |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || ||||| |
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| T |
8173620 |
gatctaagttcgacaacaacaccaacagaaactatcgaagaaattttatgtgcctcttgagatcctcgaatgcatttgcaaagtggcttactgatttcag |
8173521 |
T |
|
| Q |
301 |
ttgccaccagagattcgtatccatccagttttttatgttccaaacttgaaaccatttcgcggatctgcgttaccattccctcatgttctacctccagaca |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |
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| T |
8173520 |
ttgccaccagagattcgtatccatccagttttttatgtttcaaacttgaaaccatttcgcggatctgcgttacctttccctcatgttctacctccaaaca |
8173421 |
T |
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| Q |
401 |
atatctctaaccaaacctgttga |
423 |
Q |
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||||||||||||||||||||||| |
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| T |
8173420 |
atatctctaaccaaacctgttga |
8173398 |
T |
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