View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8091_high_21 (Length: 351)
Name: NF8091_high_21
Description: NF8091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8091_high_21 |
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Alignment Details
Target: chr5 (Bit Score: 248; Significance: 1e-137; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 19 - 338
Target Start/End: Original strand, 6505243 - 6505569
Alignment:
| Q |
19 |
ccttagttaagataaaagaaattcatatcatatcatttaagcattattgggtaaacaaattaaa-cgtttacaacaggaagcaattttcttagtcattga |
117 |
Q |
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|||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| | ||||||||||||||||||||||||| |
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| T |
6505243 |
ccttagttaaactaaaagaaattcatatcatatcatctaagcattattgggtaaacaaattaaaacgtttatcataggaagcaattttcttagtcattga |
6505342 |
T |
|
| Q |
118 |
atatgcataataggacatatttgcagcaagttgttgcttaaactgttggttgttgatcgttga------atacaaggagccattggcgcattctcatccc |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |
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| T |
6505343 |
atatgcataataggacatatttgcagcaagttgttgcttaaactgttggttgttgatcgttgaatatgcatacgaggagccattggcgcattctcatccc |
6505442 |
T |
|
| Q |
212 |
tttaaataatataataatatgtcatcagacagttcaaaacatattataatgttttggttcaatatcacctccttccaacgtttatctgaaacctttgtga |
311 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| || ||||||||||||||||||||| |
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| T |
6505443 |
tttaaataatataataatatgtcttcagacagttcaaaacatattataatattttggttcaatatcacctccttctaatgtttatctgaaacctttgtga |
6505542 |
T |
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| Q |
312 |
acgttggatttgagaaaacttctagaa |
338 |
Q |
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||||||||||||| ||||||||||||| |
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| T |
6505543 |
acgttggatttgacaaaacttctagaa |
6505569 |
T |
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