View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8091_high_3 (Length: 667)

Name: NF8091_high_3
Description: NF8091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8091_high_3
NF8091_high_3
[»] chr2 (30 HSPs)
chr2 (231-649)||(5005404-5005822)
chr2 (15-181)||(5006180-5006346)
chr2 (383-561)||(16649734-16649910)
chr2 (383-551)||(37158084-37158251)
chr2 (444-561)||(37157552-37157669)
chr2 (444-549)||(16650387-16650492)
chr2 (470-561)||(19521371-19521462)
chr2 (55-163)||(16426581-16426690)
chr2 (444-511)||(37543762-37543829)
chr2 (53-147)||(29921446-29921540)
chr2 (444-561)||(37543288-37543405)
chr2 (544-584)||(6084878-6084918)
chr2 (544-584)||(23875247-23875287)
chr2 (544-591)||(37546565-37546612)
chr2 (128-181)||(6609560-6609613)
chr2 (132-181)||(30899891-30899940)
chr2 (55-147)||(40992266-40992359)
chr2 (485-561)||(4478881-4478957)
chr2 (529-593)||(36390955-36391019)
chr2 (545-584)||(23463565-23463604)
chr2 (521-584)||(36391650-36391713)
chr2 (128-178)||(16903410-16903460)
chr2 (128-181)||(6610029-6610082)
chr2 (128-181)||(15562026-15562079)
chr2 (128-181)||(16903883-16903936)
chr2 (128-181)||(30899399-30899452)
chr2 (477-561)||(19521851-19521935)
chr2 (544-592)||(20991286-20991334)
chr2 (544-584)||(23876064-23876104)
chr2 (544-584)||(34617660-34617700)
[»] chr3 (25 HSPs)
chr3 (233-593)||(26836344-26836700)
chr3 (15-181)||(26837066-26837235)
chr3 (55-147)||(37999508-37999600)
chr3 (444-561)||(43637980-43638096)
chr3 (470-561)||(25329413-25329504)
chr3 (470-557)||(25329885-25329972)
chr3 (444-551)||(43637456-43637562)
chr3 (57-147)||(38741307-38741397)
chr3 (474-561)||(42179923-42180010)
chr3 (54-147)||(46719705-46719798)
chr3 (51-124)||(46739683-46739756)
chr3 (544-584)||(49161809-49161849)
chr3 (470-557)||(30847229-30847316)
chr3 (470-557)||(42179132-42179219)
chr3 (128-181)||(24394720-24394773)
chr3 (544-593)||(33455782-33455831)
chr3 (544-584)||(51421676-51421716)
chr3 (539-591)||(52399024-52399076)
chr3 (544-591)||(43768026-43768073)
chr3 (539-593)||(8652808-8652862)
chr3 (128-181)||(5113207-5113260)
chr3 (128-181)||(20586081-20586134)
chr3 (128-181)||(20586570-20586623)
chr3 (128-181)||(26006155-26006208)
chr3 (544-584)||(45297556-45297596)
[»] chr7 (19 HSPs)
chr7 (383-584)||(30513647-30513846)
chr7 (55-181)||(33687662-33687788)
chr7 (55-147)||(44896090-44896182)
chr7 (55-163)||(41224754-41224863)
chr7 (55-147)||(29314625-29314718)
chr7 (544-593)||(42607079-42607128)
chr7 (544-584)||(29060740-29060780)
chr7 (529-591)||(46759248-46759310)
chr7 (544-593)||(42607813-42607862)
chr7 (544-589)||(44541709-44541754)
chr7 (544-584)||(24996684-24996724)
chr7 (129-181)||(33686935-33686987)
chr7 (544-584)||(36845203-36845243)
chr7 (549-592)||(9122649-9122692)
chr7 (544-591)||(27599211-27599258)
chr7 (544-591)||(27600096-27600143)
chr7 (128-181)||(25137421-25137474)
chr7 (544-584)||(24995859-24995899)
chr7 (485-561)||(41195308-41195384)
[»] scaffold0129 (1 HSPs)
scaffold0129 (383-584)||(43060-43259)
[»] chr1 (20 HSPs)
chr1 (383-584)||(30780826-30781025)
chr1 (55-181)||(32538415-32538541)
chr1 (54-143)||(49611471-49611560)
chr1 (544-592)||(11032220-11032268)
chr1 (544-591)||(11031431-11031478)
chr1 (544-593)||(38931312-38931361)
chr1 (485-561)||(194643-194719)
chr1 (544-584)||(4640535-4640575)
chr1 (544-584)||(4641763-4641803)
chr1 (477-561)||(45811228-45811312)
chr1 (544-584)||(48835098-48835138)
chr1 (544-591)||(36272548-36272595)
chr1 (543-592)||(11426852-11426901)
chr1 (539-592)||(29334213-29334266)
chr1 (128-181)||(38468915-38468968)
chr1 (539-592)||(43316356-43316409)
chr1 (128-181)||(43755858-43755911)
chr1 (544-584)||(30466189-30466229)
chr1 (126-178)||(32537657-32537709)
chr1 (543-595)||(34716420-34716472)
[»] chr8 (21 HSPs)
chr8 (383-561)||(28090687-28090863)
chr8 (444-561)||(28091278-28091395)
chr8 (444-561)||(42345196-42345313)
chr8 (444-557)||(42346461-42346574)
chr8 (53-176)||(41348158-41348282)
chr8 (55-163)||(41092200-41092309)
chr8 (55-147)||(35759151-35759243)
chr8 (45-163)||(42573607-42573725)
chr8 (51-156)||(36935666-36935771)
chr8 (51-147)||(30272142-30272238)
chr8 (62-181)||(42111525-42111643)
chr8 (470-561)||(44835356-44835447)
chr8 (470-560)||(44834739-44834829)
chr8 (544-592)||(43433810-43433858)
chr8 (544-591)||(42345394-42345441)
chr8 (58-163)||(35387381-35387485)
chr8 (544-593)||(37563033-37563082)
chr8 (544-593)||(42346106-42346155)
chr8 (544-593)||(42914812-42914861)
chr8 (544-584)||(37562302-37562342)
chr8 (544-592)||(44751607-44751655)
[»] chr6 (14 HSPs)
chr6 (55-177)||(28534779-28534901)
chr6 (55-181)||(18605011-18605137)
chr6 (444-554)||(14336650-14336760)
chr6 (464-561)||(14337478-14337575)
chr6 (53-176)||(1034735-1034859)
chr6 (51-163)||(10608228-10608340)
chr6 (51-148)||(930967-931064)
chr6 (470-561)||(7159268-7159359)
chr6 (474-560)||(7158466-7158552)
chr6 (544-584)||(34035045-34035085)
chr6 (544-591)||(24126719-24126766)
chr6 (128-181)||(7635133-7635186)
chr6 (128-181)||(18290481-18290534)
chr6 (53-109)||(9428033-9428089)
[»] chr5 (28 HSPs)
chr5 (44-181)||(42654846-42654983)
chr5 (383-584)||(27122824-27123022)
chr5 (446-561)||(7625926-7626041)
chr5 (464-561)||(7625503-7625599)
chr5 (477-561)||(26688675-26688759)
chr5 (477-561)||(26958406-26958490)
chr5 (478-561)||(26688196-26688279)
chr5 (478-561)||(26957927-26958010)
chr5 (543-593)||(9142045-9142095)
chr5 (544-584)||(4789527-4789567)
chr5 (459-526)||(6354603-6354668)
chr5 (544-591)||(1970515-1970562)
chr5 (470-552)||(14553898-14553980)
chr5 (530-584)||(26712375-26712429)
chr5 (530-584)||(26982113-26982167)
chr5 (128-181)||(3595786-3595839)
chr5 (128-181)||(7858336-7858389)
chr5 (128-181)||(8320884-8320937)
chr5 (128-181)||(8321373-8321426)
chr5 (128-181)||(12330648-12330701)
chr5 (476-557)||(14553701-14553782)
chr5 (132-181)||(24027196-24027245)
chr5 (544-584)||(2522689-2522729)
chr5 (543-591)||(4555389-4555437)
chr5 (544-592)||(4607137-4607185)
chr5 (545-593)||(4874582-4874630)
chr5 (544-592)||(32943516-32943564)
chr5 (544-584)||(42650764-42650804)
[»] chr4 (30 HSPs)
chr4 (444-561)||(46707913-46708030)
chr4 (55-163)||(39413534-39413642)
chr4 (447-561)||(46707424-46707538)
chr4 (54-147)||(52758621-52758714)
chr4 (477-584)||(231983-232090)
chr4 (53-176)||(11680290-11680414)
chr4 (53-176)||(11688569-11688693)
chr4 (55-147)||(49399474-49399566)
chr4 (470-561)||(30478339-30478430)
chr4 (470-561)||(48013347-48013438)
chr4 (55-147)||(31634147-31634240)
chr4 (51-163)||(25655547-25655659)
chr4 (51-147)||(53289517-53289613)
chr4 (51-149)||(3619040-3619138)
chr4 (53-147)||(12590113-12590207)
chr4 (544-584)||(25970113-25970153)
chr4 (51-163)||(46764280-46764392)
chr4 (470-557)||(30478811-30478898)
chr4 (544-591)||(36450728-36450775)
chr4 (544-591)||(47376852-47376899)
chr4 (544-578)||(34371475-34371509)
chr4 (128-181)||(5235383-5235436)
chr4 (128-181)||(20174979-20175032)
chr4 (544-593)||(23425208-23425257)
chr4 (544-593)||(25970804-25970853)
chr4 (544-584)||(22499105-22499145)
chr4 (544-592)||(38009283-38009331)
chr4 (544-592)||(39652060-39652108)
chr4 (545-593)||(47523217-47523265)
chr4 (543-591)||(55514354-55514402)
[»] scaffold0180 (1 HSPs)
scaffold0180 (51-147)||(23000-23096)
[»] scaffold0069 (1 HSPs)
scaffold0069 (45-99)||(1840-1894)
[»] scaffold0155 (1 HSPs)
scaffold0155 (55-163)||(17367-17476)
[»] scaffold0150 (1 HSPs)
scaffold0150 (549-591)||(14012-14054)
[»] scaffold2003 (1 HSPs)
scaffold2003 (539-592)||(527-580)
[»] scaffold0508 (1 HSPs)
scaffold0508 (128-181)||(4142-4195)


Alignment Details
Target: chr2 (Bit Score: 371; Significance: 0; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 231 - 649
Target Start/End: Complemental strand, 5005822 - 5005404
Alignment:
Q  231 agtatgattcctatctagtacaaatagaaagcatttatatcatggattgagtagcagtaagacaaagttaattctacattgaatcaaactaagtttttgt 330  Q
    |||||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  5005822 agtatgattcatatctagtacaaatagaaagcatttgtatcatggattgagtagcggtaagacaaagttaattctacattgaatcaaactaagtttttgt 5005723  T
Q  331 gtttcgacacatcttaataagaagaatggttgttgtggtaattacttgttctagcaattataatgaaaagttaatatcaaaatcggtggtgccggtggtt 430  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  5005722 gtttcgacacatcttaataagaaaaatggttgttgtggtaattacttgttctagcaattataatgaaaagttaatatcaaaatcggtggtgctggtggtt 5005623  T
Q  431 tattattgatgtctggttgatgattgtaaggttgaagacaaaggggaaaaaatttagtgtagagagactatggtaaaatcagtgtccctctttaattcaa 530  Q
    ||||||||||||||||||||| ||||||||||||||| |||||| ||||||||||||| |||||||||||||||||||||||||||||||||| || |||    
T  5005622 tattattgatgtctggttgataattgtaaggttgaaggcaaaggagaaaaaatttagtatagagagactatggtaaaatcagtgtccctctttgatccaa 5005523  T
Q  531 tggttatgatttgctttcccatgatgggaaacaattcccctttcccatgctaaatgccacctagaacacatggggatatttgtttccatcatccaaatac 630  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  5005522 tggttatgatttgctttcccatgatgggaaacaattcccctttcccatgctaaatgccacctagaacacatggggatatttgtttccatcatccaaacac 5005423  T
Q  631 aggtgaggagagcgatagt 649  Q
    |||||||||||||||||||    
T  5005422 aggtgaggagagcgatagt 5005404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 15 - 181
Target Start/End: Original strand, 5006180 - 5006346
Alignment:
Q  15 cagagaaggatggaagcaaatgcgtttgttagggggagggtggtggtggaagatgatgtggaaaaaattaagtgttgagagactacggtaaaattttgtt 114  Q
    |||||||||||| |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  5006180 cagagaaggatgaaagcaaatgcttttgttaggggaagggtggtggtggaagatgatgtggaaaaaattaagtgttgagagacaatggtaaaattttgtt 5006279  T
Q  115 ccctacttaacccaatggttaaaaactaactttttcacggtgggaaaaactaacatttcccatgcta 181  Q
    ||||||||||  ||||| ||||||| ||||||| ||| |||||||| ||||| ||||| ||||||||    
T  5006280 ccctacttaattcaatgattaaaaagtaactttctcatggtgggaataactatcattttccatgcta 5006346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 383 - 561
Target Start/End: Complemental strand, 16649910 - 16649734
Alignment:
Q  383 agcaattataatgaaaagttaatatcaaaatcggtggtgccggtggtttattattgatgtctggttgatgattgtaaggttgaagacaaaggggaaaaaa 482  Q
    |||||||| |||||| ||||||| ||||||||| | |||| |||||  | |||||  ||| ||||||||||||||||||||||||| |||||||||||||    
T  16649910 agcaattacaatgaagagttaatgtcaaaatcgatagtgctggtggggt-ttatttgtgt-tggttgatgattgtaaggttgaagataaaggggaaaaaa 16649813  T
Q  483 tttagtgtagagagactatggtaaaatcagtgtccctctttaattcaatggttatgatttgctttcccatgatgggaaa 561  Q
    | || | |||| |||||||| |||||||| ||| |||||| |||  |||||||  ||||| ||||||||||||||||||    
T  16649812 tataatatagaaagactatgataaaatcaatgttcctcttgaatctaatggttgagatttactttcccatgatgggaaa 16649734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 383 - 551
Target Start/End: Original strand, 37158084 - 37158251
Alignment:
Q  383 agcaattataatgaaa-agttaatatcaaaatcggtggtgccggtggtttattattgatgtctggttgatgattgtaaggttgaagacaaaggggaaaaa 481  Q
    |||||||| ||||||| |||||||| ||||||||||||||| |||||  | |||||  ||| ||||||||||||||||||||||||| |||||| |||||    
T  37158084 agcaattacaatgaaagagttaataccaaaatcggtggtgctggtggggt-ttatttgtgt-tggttgatgattgtaaggttgaagataaagggaaaaaa 37158181  T
Q  482 atttagtgtagagagactatggtaaaatcagtgtccctctttaattcaatggttatgatttgctttccca 551  Q
    || || |||||| |||||||| |||||||| ||| |||||| |||  |||||||  ||||| ||||||||    
T  37158182 atataatgtagaaagactatgataaaatcaatgttcctcttgaatctaatggttgagatttactttccca 37158251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 444 - 561
Target Start/End: Complemental strand, 37157669 - 37157552
Alignment:
Q  444 tggttgatgattgtaaggttgaagacaaaggggaaaaaatttagtgtagagagactatggtaaaatcagtgtccctctttaattcaatggttatgatttg 543  Q
    ||||||||||||||||||||||||| |||||||||||||| || |||||| |||||||| |||||||| |||  ||||| |||  |||||||  |||||     
T  37157669 tggttgatgattgtaaggttgaagataaaggggaaaaaatataatgtagaaagactatgataaaatcaatgtttctcttgaatctaatggttgagattta 37157570  T
Q  544 ctttcccatgatgggaaa 561  Q
    |||||| |||||||||||    
T  37157569 ctttcctatgatgggaaa 37157552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 444 - 549
Target Start/End: Original strand, 16650387 - 16650492
Alignment:
Q  444 tggttgatgattgtaaggttgaagacaaaggggaaaaaatttagtgtagagagactatggtaaaatcagtgtccctctttaattcaatggttatgatttg 543  Q
    ||||||||||||||||||||||||| |||||||||||||| || |||||| |||||||| |||||||| | | |||||| |||  |||||||  |||||     
T  16650387 tggttgatgattgtaaggttgaagataaaggggaaaaaatataatgtagacagactatgataaaatcaatattcctcttgaatctaatggttgagattta 16650486  T
Q  544 ctttcc 549  Q
    ||||||    
T  16650487 ctttcc 16650492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 470 - 561
Target Start/End: Complemental strand, 19521462 - 19521371
Alignment:
Q  470 aaaggggaaaaaatttagtgtagagagactatggtaaaatcagtgtccctctttaattcaatggttatgatttgctttcccatgatgggaaa 561  Q
    |||||||||||||| || |||||| |||||||| |||||||| ||| |||||| |||  |||||||| ||||| ||||||||||||||||||    
T  19521462 aaaggggaaaaaatataatgtagaaagactatgataaaatcaatgttcctcttgaatctaatggttaagatttactttcccatgatgggaaa 19521371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 55 - 163
Target Start/End: Complemental strand, 16426690 - 16426581
Alignment:
Q  55 tggtggtggaagatgatgtggaaaaaattaa-gtgttgagagactacggtaaaattttgttccctacttaacccaatggttaaaaactaactttttcacg 153  Q
    ||||||||||||||||||  ||||||| ||  ||||||| |||| | | ||||||| | |||||||||||| | |||||||||||| |||||||| || |    
T  16426690 tggtggtggaagatgatgaagaaaaaaatagtgtgttgaaagaccatgataaaattgtattccctacttaatcaaatggttaaaaattaacttttccatg 16426591  T
Q  154 gtgggaaaaa 163  Q
    ||||||||||    
T  16426590 gtgggaaaaa 16426581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 444 - 511
Target Start/End: Original strand, 37543762 - 37543829
Alignment:
Q  444 tggttgatgattgtaaggttgaagacaaaggggaaaaaatttagtgtagagagactatggtaaaatca 511  Q
    ||||||||||||||||||||||| | |||||| ||||||| || |||||| |||||||| ||||||||    
T  37543762 tggttgatgattgtaaggttgaaaataaagggaaaaaaatataatgtagaaagactatgataaaatca 37543829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 53 - 147
Target Start/End: Original strand, 29921446 - 29921540
Alignment:
Q  53 ggtggtggtggaagatgatgtggaaaaaattaagtgttgagagactacggtaaaattttgttccctacttaacccaatggttaaaaactaacttt 147  Q
    ||||||||||||||||||||| | ||||||| | ||||||||||| |   ||||||| ||| ||||| ||||   ||||||||||||||||||||    
T  29921446 ggtggtggtggaagatgatgtcggaaaaatttaatgttgagagaccattataaaattgtgtaccctatttaatttaatggttaaaaactaacttt 29921540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 444 - 561
Target Start/End: Complemental strand, 37543405 - 37543288
Alignment:
Q  444 tggttgatgattgtaaggttgaagacaaaggggaaaaaatttagtgtagagagactatggtaaaatcagtgtccctctttaattcaatggttatgatttg 543  Q
    ||||||||||||||||||||||||| |||||||||||||| || | || | |||||| | |||||||| ||| | |||| |||  |||||||  |||||     
T  37543405 tggttgatgattgtaaggttgaagataaaggggaaaaaatataatttaaaaagactaggataaaatcaatgttcatcttgaatctaatggttgagattta 37543306  T
Q  544 ctttcccatgatgggaaa 561  Q
    ||||  |||||| |||||    
T  37543305 ctttttcatgataggaaa 37543288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 544 - 584
Target Start/End: Complemental strand, 6084918 - 6084878
Alignment:
Q  544 ctttcccatgatgggaaacaattcccctttcccatgctaaa 584  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  6084918 ctttcccatgatgggaaacaattcccctttcccatgttaaa 6084878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 544 - 584
Target Start/End: Complemental strand, 23875287 - 23875247
Alignment:
Q  544 ctttcccatgatgggaaacaattcccctttcccatgctaaa 584  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  23875287 ctttcccatgatgcgaaacaattcccctttcccatgctaaa 23875247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 544 - 591
Target Start/End: Original strand, 37546565 - 37546612
Alignment:
Q  544 ctttcccatgatgggaaacaattcccctttcccatgctaaatgccacc 591  Q
    ||||||||||||||||||||| |||||||||||||  |||||||||||    
T  37546565 ctttcccatgatgggaaacaactcccctttcccattttaaatgccacc 37546612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 181
Target Start/End: Complemental strand, 6609613 - 6609560
Alignment:
Q  128 aatggttaaaaactaactttttcacggtgggaaaaactaacatttcccatgcta 181  Q
    ||||||||||||||||||||| || ||||||||||| || | ||||||||||||    
T  6609613 aatggttaaaaactaacttttccatggtgggaaaaattagcctttcccatgcta 6609560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 181
Target Start/End: Original strand, 30899891 - 30899940
Alignment:
Q  132 gttaaaaactaactttttcacggtgggaaaaactaacatttcccatgcta 181  Q
    |||||||||||||||||||| ||||||||||| || | ||||||||||||    
T  30899891 gttaaaaactaactttttcatggtgggaaaaattagcctttcccatgcta 30899940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 147
Target Start/End: Complemental strand, 40992359 - 40992266
Alignment:
Q  55 tggtggtggaagatgatgtggaaaaaattaa-gtgttgagagactacggtaaaattttgttccctacttaacccaatggttaaaaactaacttt 147  Q
    ||||||||||||||||||  ||||||| ||  ||||| | |||| | | ||||||| ||||||||| |||| | ||||||||||||||||||||    
T  40992359 tggtggtggaagatgatgaagaaaaaaatagtgtgttaaaagaccatgataaaattgtgttccctatttaatcaaatggttaaaaactaacttt 40992266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 485 - 561
Target Start/End: Complemental strand, 4478957 - 4478881
Alignment:
Q  485 tagtgtagagagactatggtaaaatcagtgtccctctttaattcaatggttatgatttgctttcccatgatgggaaa 561  Q
    |||||| |||||| |||| |||||||| ||| |||||| |||  |||||||  ||||| ||||||||||||||||||    
T  4478957 tagtgtggagagagtatgataaaatcaatgttcctcttgaatataatggttgagatttactttcccatgatgggaaa 4478881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 529 - 593
Target Start/End: Complemental strand, 36391019 - 36390955
Alignment:
Q  529 aatggttatgatttgctttcccatgatgggaaacaattcccctttcccatgctaaatgccaccta 593  Q
    ||||||||  |||| |||||||||| |||||||||| | |||||||||||||||||  |||||||    
T  36391019 aatggttaaaatttactttcccatggtgggaaacaacttccctttcccatgctaaaccccaccta 36390955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 545 - 584
Target Start/End: Original strand, 23463565 - 23463604
Alignment:
Q  545 tttcccatgatgggaaacaattcccctttcccatgctaaa 584  Q
    ||||||||||||||||||||||||||||| |||| |||||    
T  23463565 tttcccatgatgggaaacaattccccttttccattctaaa 23463604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 521 - 584
Target Start/End: Original strand, 36391650 - 36391713
Alignment:
Q  521 tttaattcaatggttatgatttgctttcccatgatgggaaacaattcccctttcccatgctaaa 584  Q
    ||||||| ||||||||  |||| |||||||||| ||| |||||| ||||||||||||| |||||    
T  36391650 tttaatttaatggttaaaatttactttcccatggtggaaaacaactcccctttcccatactaaa 36391713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 128 - 178
Target Start/End: Complemental strand, 16903460 - 16903410
Alignment:
Q  128 aatggttaaaaactaactttttcacggtgggaaaaactaacatttcccatg 178  Q
    ||||||||||||||||||||| || ||||||||||| || | |||||||||    
T  16903460 aatggttaaaaactaacttttccatggtgggaaaaattagcctttcccatg 16903410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 181
Target Start/End: Original strand, 6610029 - 6610082
Alignment:
Q  128 aatggttaaaaactaactttttcacggtgggaaaaactaacatttcccatgcta 181  Q
    ||||||||||||||||||||  || ||||||||||| || | ||||||||||||    
T  6610029 aatggttaaaaactaactttcccatggtgggaaaaattagcctttcccatgcta 6610082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 181
Target Start/End: Original strand, 15562026 - 15562079
Alignment:
Q  128 aatggttaaaaactaactttttcacggtgggaaaaactaacatttcccatgcta 181  Q
    ||||||||||||||||||||  || ||||||||||| || | ||||||||||||    
T  15562026 aatggttaaaaactaactttcccatggtgggaaaaattagcctttcccatgcta 15562079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 181
Target Start/End: Original strand, 16903883 - 16903936
Alignment:
Q  128 aatggttaaaaactaactttttcacggtgggaaaaactaacatttcccatgcta 181  Q
    ||||||||||||||||||||  || ||||||||||| || | ||||||||||||    
T  16903883 aatggttaaaaactaactttcccatggtgggaaaaattagcctttcccatgcta 16903936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 181
Target Start/End: Complemental strand, 30899452 - 30899399
Alignment:
Q  128 aatggttaaaaactaactttttcacggtgggaaaaactaacatttcccatgcta 181  Q
    ||||||||||||||||||||  || ||||||||||| || | ||||||||||||    
T  30899452 aatggttaaaaactaactttcccatggtgggaaaaattagcctttcccatgcta 30899399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 477 - 561
Target Start/End: Original strand, 19521851 - 19521935
Alignment:
Q  477 aaaaaatttagtgtagagagactatggtaaaatcagtgtccctctttaattcaatggttatgatttgctttcccatgatgggaaa 561  Q
    ||||||| || |||||| |||||||| |||||||| | | |||||| |||  |||| ||  ||||| ||||||||||||||||||    
T  19521851 aaaaaatataatgtagaaagactatgataaaatcaatattcctcttgaatctaatgattgagatttactttcccatgatgggaaa 19521935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 544 - 592
Target Start/End: Complemental strand, 20991334 - 20991286
Alignment:
Q  544 ctttcccatgatgggaaacaattcccctttcccatgctaaatgccacct 592  Q
    |||||||||| ||| |||||| || || |||||||||||||||||||||    
T  20991334 ctttcccatggtggaaaacaactctccattcccatgctaaatgccacct 20991286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 544 - 584
Target Start/End: Original strand, 23876064 - 23876104
Alignment:
Q  544 ctttcccatgatgggaaacaattcccctttcccatgctaaa 584  Q
    |||||||||| |||||||||| |||| ||||||||||||||    
T  23876064 ctttcccatggtgggaaacaactcccatttcccatgctaaa 23876104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 544 - 584
Target Start/End: Complemental strand, 34617700 - 34617660
Alignment:
Q  544 ctttcccatgatgggaaacaattcccctttcccatgctaaa 584  Q
    |||||||||| ||||||||||||  ||||||||||||||||    
T  34617700 ctttcccatggtgggaaacaattatcctttcccatgctaaa 34617660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 263; Significance: 1e-146; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 233 - 593
Target Start/End: Complemental strand, 26836700 - 26836344
Alignment:
Q  233 tatgattcctatctagtacaaatagaaagcatttatatcatggattgagtagcagtaagacaaagttaattctacattgaatcaaactaagtttttgtgt 332  Q
    |||||||||||||||||| ||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26836700 tatgattcctatctagtataaatagaaagcatttatatcatatattgagtagcagtaagacaaagttaattctacattgaatcaaactaagtttttgtgt 26836601  T
Q  333 ttcgacacatcttaataagaagaatggttgttgtggtaattacttgttctagcaattataatgaaaagttaatatcaaaatcggtggtgccggtggttta 432  Q
    ||||||||||||||||||||| |||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||      
T  26836600 ttcgacacatcttaataagaaaaatgattgttgtcgtaaatacttgttctagcaattataatgaaaagttaatatcaaaatcgatggtgctggtggtt-- 26836503  T
Q  433 ttattgatgtctggttgatgattgtaaggttgaagacaaaggggaaaaaatttagtgtagagagactatggtaaaatcagtgtccctctttaattcaatg 532  Q
     |||||||||||||||||||||| ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||| |||||| ||| ||||    
T  26836502 -tattgatgtctggttgatgattctaaggttgaagacaaaggaaaaaaaatttagtgtagagagactatggtaaaatcagtgtctctctttgatt-aatg 26836405  T
Q  533 gttatgatttgctttcccatgatgggaaacaattcccctttcccatgctaaatgccaccta 593  Q
     ||| |||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||    
T  26836404 attaagatttgtttttccatgatgggaaacaattcccctttcccatgctaaatgtcaccta 26836344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 15 - 181
Target Start/End: Original strand, 26837066 - 26837235
Alignment:
Q  15 cagagaaggatggaagcaaatgcgtttgttaggggg---agggtggtggtggaagatgatgtggaaaaaattaagtgttgagagactacggtaaaatttt 111  Q
    ||||||||||||||||||||||| ||||||||| ||   ||||||||||||||||||||||||||||||||| ||||||||||||| | |||||||||||    
T  26837066 cagagaaggatggaagcaaatgcttttgttaggcgggtaagggtggtggtggaagatgatgtggaaaaaattgagtgttgagagaccatggtaaaatttt 26837165  T
Q  112 gttccctacttaacccaatggttaaaaactaactttttcacggtgggaaaaactaacatttcccatgcta 181  Q
    |||||||||||||  ||||||||||||||||| |||  || ||||||| |||| | | ||||||||||||    
T  26837166 gttccctacttaattcaatggttaaaaactaattttcccatggtgggataaacaagcctttcccatgcta 26837235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 55 - 147
Target Start/End: Complemental strand, 37999600 - 37999508
Alignment:
Q  55 tggtggtggaagatgatgtggaaaaaattaagtgttgagagactacggtaaaattttgttccctacttaacccaatggttaaaaactaacttt 147  Q
    ||||||||||||||||||||||||||||| ||||||||||||  | ||||||||||||||||||||||||  |||||||||||||||||||||    
T  37999600 tggtggtggaagatgatgtggaaaaaattgagtgttgagagatcatggtaaaattttgttccctacttaattcaatggttaaaaactaacttt 37999508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 444 - 561
Target Start/End: Original strand, 43637980 - 43638096
Alignment:
Q  444 tggttgatgattgtaaggttgaagacaaaggggaaaaaatttagtgtagagagactatggtaaaatcagtgtccctctttaattcaatggttatgatttg 543  Q
    ||||||||||||||||||||||||| |||||  ||||||| || |||||| |||||||| |||||||| ||| |||||| |||  |||||||  |||||     
T  43637980 tggttgatgattgtaaggttgaagataaagga-aaaaaatataatgtagaaagactatgataaaatcaatgttcctcttaaatctaatggttgagattta 43638078  T
Q  544 ctttcccatgatgggaaa 561  Q
    ||||||||||||||||||    
T  43638079 ctttcccatgatgggaaa 43638096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 470 - 561
Target Start/End: Complemental strand, 25329504 - 25329413
Alignment:
Q  470 aaaggggaaaaaatttagtgtagagagactatggtaaaatcagtgtccctctttaattcaatggttatgatttgctttcccatgatgggaaa 561  Q
    |||||||||||||| || |||||| |||||||| |||||||| ||| |||||| |||  |||||||  ||||| ||||||||||||||||||    
T  25329504 aaaggggaaaaaatataatgtagaaagactatgataaaatcaatgttcctcttgaatctaatggttgagatttactttcccatgatgggaaa 25329413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 470 - 557
Target Start/End: Original strand, 25329885 - 25329972
Alignment:
Q  470 aaaggggaaaaaatttagtgtagagagactatggtaaaatcagtgtccctctttaattcaatggttatgatttgctttcccatgatgg 557  Q
    |||||||||||||| || ||||||||||||||| |||||||| ||| |||||| |||  |||||||  ||||| ||||||||||||||    
T  25329885 aaaggggaaaaaatataatgtagagagactatgataaaatcaatgttcctcttaaatctaatggttgagatttactttcccatgatgg 25329972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 444 - 551
Target Start/End: Complemental strand, 43637562 - 43637456
Alignment:
Q  444 tggttgatgattgtaaggttgaagacaaaggggaaaaaatttagtgtagagagactatggtaaaatcagtgtccctctttaattcaatggttatgatttg 543  Q
    ||||||||||||||||||||||||| |||||||| ||||| || |||||| |||||||| |||||||| |||  ||||| |||  |||||||  |||||     
T  43637562 tggttgatgattgtaaggttgaagataaagggga-aaaatataatgtagaaagactatgataaaatcaatgtttctcttgaatctaatggttgagattta 43637464  T
Q  544 ctttccca 551  Q
    ||||||||    
T  43637463 ctttccca 43637456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 57 - 147
Target Start/End: Complemental strand, 38741397 - 38741307
Alignment:
Q  57 gtggtggaagatgatgtggaaaaaattaagtgttgagagactacggtaaaattttgttccctacttaacccaatggttaaaaactaacttt 147  Q
    |||||||||||||  |||||||| ||| ||||||||||||| | ||||||||| ||||||||| |||| | |||||  |||||||||||||    
T  38741397 gtggtggaagatgtggtggaaaatatttagtgttgagagaccatggtaaaattgtgttccctatttaatctaatggccaaaaactaacttt 38741307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 474 - 561
Target Start/End: Original strand, 42179923 - 42180010
Alignment:
Q  474 gggaaaaaatttagtgtagagagactatggtaaaatcagtgtccctctttaattcaatggttatgatttgctttcccatgatgggaaa 561  Q
    |||||||||| || |||||| |||||||| |||||||| ||| |||||| |||| |||||||  ||||| ||||||||||||| ||||    
T  42179923 gggaaaaaatataatgtagaaagactatgataaaatcaatgttcctcttgaatttaatggttgagatttactttcccatgatgagaaa 42180010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 54 - 147
Target Start/End: Complemental strand, 46719798 - 46719705
Alignment:
Q  54 gtggtggtggaagatgatgtggaaaaaattaagtgttgagagactacggtaaaattttgttccctacttaacccaatggttaaaaactaacttt 147  Q
    ||||||||||||||||  || ||||| ||| | ||||||||||| | ||||||||| ||||||||| |||| | |||||  |||||||||||||    
T  46719798 gtggtggtggaagatgtggtagaaaatatttaatgttgagagaccatggtaaaattgtgttccctatttaatctaatggccaaaaactaacttt 46719705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 51 - 124
Target Start/End: Complemental strand, 46739756 - 46739683
Alignment:
Q  51 agggtggtggtggaagatgatgtggaaaaaattaagtgttgagagactacggtaaaattttgttccctacttaa 124  Q
    ||||||||||||||||||||||||  ||||||| ||||||||||||| | | | ||||| ||||||||| ||||    
T  46739756 agggtggtggtggaagatgatgtgacaaaaatttagtgttgagagaccatgatgaaattatgttccctatttaa 46739683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 544 - 584
Target Start/End: Original strand, 49161809 - 49161849
Alignment:
Q  544 ctttcccatgatgggaaacaattcccctttcccatgctaaa 584  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  49161809 ctttcccatggtgggaaacaattcccctttcccatgctaaa 49161849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 470 - 557
Target Start/End: Complemental strand, 30847316 - 30847229
Alignment:
Q  470 aaaggggaaaaaatttagtgtagagagactatggtaaaatcagtgtccctctttaattcaatggttatgatttgctttcccatgatgg 557  Q
    |||||||||||||| || |||||| |||||||| |||||||| ||| |||||| |||  |||||||  ||||| |||| |||||||||    
T  30847316 aaaggggaaaaaatataatgtagaaagactatgataaaatcaatgttcctcttgaatctaatggttgagatttacttttccatgatgg 30847229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 470 - 557
Target Start/End: Complemental strand, 42179219 - 42179132
Alignment:
Q  470 aaaggggaaaaaatttagtgtagagagactatggtaaaatcagtgtccctctttaattcaatggttatgatttgctttcccatgatgg 557  Q
    |||||||||||||| || |||||| |||||||| |||||||| ||| |||||| |||  |||||||  ||||| |||| |||||||||    
T  42179219 aaaggggaaaaaatataatgtagaaagactatgataaaatcaatgttcctcttaaatctaatggttgagatttacttttccatgatgg 42179132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 181
Target Start/End: Original strand, 24394720 - 24394773
Alignment:
Q  128 aatggttaaaaactaactttttcacggtgggaaaaactaacatttcccatgcta 181  Q
    ||||||||||||||||||||  || ||||||||||| || ||||||||||||||    
T  24394720 aatggttaaaaactaactttcccatggtgggaaaaattagcatttcccatgcta 24394773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 544 - 593
Target Start/End: Original strand, 33455782 - 33455831
Alignment:
Q  544 ctttcccatgatgggaaacaattcccctttcccatgctaaatgccaccta 593  Q
    |||||| ||| ||||||||||||||||||||||||||||||  |||||||    
T  33455782 ctttcctatggtgggaaacaattcccctttcccatgctaaaccccaccta 33455831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 544 - 584
Target Start/End: Original strand, 51421676 - 51421716
Alignment:
Q  544 ctttcccatgatgggaaacaattcccctttcccatgctaaa 584  Q
    |||||||||| |||||||||||||||||||| |||||||||    
T  51421676 ctttcccatggtgggaaacaattcccctttctcatgctaaa 51421716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 539 - 591
Target Start/End: Original strand, 52399024 - 52399076
Alignment:
Q  539 atttgctttcccatgatgggaaacaattcccctttcccatgctaaatgccacc 591  Q
    |||| |||||||||||||||||||  || |||||| |||||||||||||||||    
T  52399024 atttactttcccatgatgggaaactctttcccttttccatgctaaatgccacc 52399076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 544 - 591
Target Start/End: Complemental strand, 43768073 - 43768026
Alignment:
Q  544 ctttcccatgatgggaaacaattcccctttcccatgctaaatgccacc 591  Q
    |||||||||| |||||||||| || || ||||||||||||||||||||    
T  43768073 ctttcccatggtgggaaacaactctccattcccatgctaaatgccacc 43768026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 539 - 593
Target Start/End: Complemental strand, 8652862 - 8652808
Alignment:
Q  539 atttgctttcccatgatgggaaacaattcccctttcccatgctaaatgccaccta 593  Q
    |||| |||||||||| |||||| | |||||||||||||||||||||  |||||||    
T  8652862 atttactttcccatggtgggaaccgattcccctttcccatgctaaaccccaccta 8652808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 181
Target Start/End: Complemental strand, 5113260 - 5113207
Alignment:
Q  128 aatggttaaaaactaactttttcacggtgggaaaaactaacatttcccatgcta 181  Q
    ||||||||||||||||||||  || ||||||||||| || | ||||||||||||    
T  5113260 aatggttaaaaactaactttcccatggtgggaaaaattagcctttcccatgcta 5113207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 181
Target Start/End: Complemental strand, 20586134 - 20586081
Alignment:
Q  128 aatggttaaaaactaactttttcacggtgggaaaaactaacatttcccatgcta 181  Q
    ||||||||||||||||||||  || ||||||||||| || | ||||||||||||    
T  20586134 aatggttaaaaactaactttcccatggtgggaaaaattagcctttcccatgcta 20586081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 181
Target Start/End: Original strand, 20586570 - 20586623
Alignment:
Q  128 aatggttaaaaactaactttttcacggtgggaaaaactaacatttcccatgcta 181  Q
    ||||||||||||||||||||  || ||||||||||| || | ||||||||||||    
T  20586570 aatggttaaaaactaactttcccatggtgggaaaaattagcctttcccatgcta 20586623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 181
Target Start/End: Complemental strand, 26006208 - 26006155
Alignment:
Q  128 aatggttaaaaactaactttttcacggtgggaaaaactaacatttcccatgcta 181  Q
    ||||||||||||||||||||  || ||||||||||| || | ||||||||||||    
T  26006208 aatggttaaaaactaactttcccatggtgggaaaaattagcctttcccatgcta 26006155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 544 - 584
Target Start/End: Complemental strand, 45297596 - 45297556
Alignment:
Q  544 ctttcccatgatgggaaacaattcccctttcccatgctaaa 584  Q
    ||||||||||||||||||||| || |||||||||| |||||    
T  45297596 ctttcccatgatgggaaacaactctcctttcccatactaaa 45297556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 94; Significance: 2e-45; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 383 - 584
Target Start/End: Complemental strand, 30513846 - 30513647
Alignment:
Q  383 agcaattataatgaaaagttaatatcaaaatcggtggtgccggtggtttattattgatgtctggttgatgattgtaaggttgaagacaaaggggaaaaaa 482  Q
    |||||||| |||||| |||||||  ||||||||||||||| |||||  | |||||  ||| ||||||||||||||||||||||||| ||||||||| |||    
T  30513846 agcaattacaatgaagagttaatgccaaaatcggtggtgctggtggggt-ttatttgtgt-tggttgatgattgtaaggttgaagataaaggggaataaa 30513749  T
Q  483 tttagtgtagagagactatggtaaaatcagtgtccctctttaattcaatggttatgatttgctttcccatgatgggaaacaattcccctttcccatgcta 582  Q
    ||||||||||||||| |||| |||||||| ||| ||||||||||| |||||||| ||||| |||| |||| ||| ||||||| ||||||||||||| |||    
T  30513748 tttagtgtagagagattatgataaaatcaatgttcctctttaatttaatggttaagatttacttttccataatgagaaacaactcccctttcccatacta 30513649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 55 - 181
Target Start/End: Original strand, 33687662 - 33687788
Alignment:
Q  55 tggtggtggaagatgatgtggaaaaaattaagtgttgagagactacggtaaaattttgttccctacttaacccaatggttaaaaactaactttttcacgg 154  Q
    ||||| |||||||||||||||||||  || ||||||||||||| | | ||| ||| ||||||||||||||  ||||||||||||||||||||| ||| ||    
T  33687662 tggtgatggaagatgatgtggaaaatttttagtgttgagagaccatgataacattatgttccctacttaattcaatggttaaaaactaactttctcatgg 33687761  T
Q  155 tgggaaaaactaacatttcccatgcta 181  Q
    ||| ||||| || | ||||||||||||    
T  33687762 tggaaaaaattagcctttcccatgcta 33687788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 55 - 147
Target Start/End: Complemental strand, 44896182 - 44896090
Alignment:
Q  55 tggtggtggaagatgatgtggaaaaaattaagtgttgagagactacggtaaaattttgttccctacttaacccaatggttaaaaactaacttt 147  Q
    ||||||||||||||||||||| |||||||   ||||||||||| | | ||||||| ||| ||||| |||| | ||||||||||||||||||||    
T  44896182 tggtggtggaagatgatgtgggaaaaatttgatgttgagagaccatgataaaattgtgtaccctatttaatctaatggttaaaaactaacttt 44896090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 55 - 163
Target Start/End: Original strand, 41224754 - 41224863
Alignment:
Q  55 tggtggtggaagatgatgtggaaaaaattaa-gtgttgagagactacggtaaaattttgttccctacttaacccaatggttaaaaactaactttttcacg 153  Q
    ||||||||||||||||||  ||||||| ||  ||||||| |||| | | ||||||| ||||||||| |||| | ||||||||||||||||||||  || |    
T  41224754 tggtggtggaagatgatgaagaaaaaaatagtgtgttgaaagaccatgataaaattgtgttccctatttaatcaaatggttaaaaactaactttcccatg 41224853  T
Q  154 gtgggaaaaa 163  Q
    ||||||||||    
T  41224854 gtgggaaaaa 41224863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 55 - 147
Target Start/End: Complemental strand, 29314718 - 29314625
Alignment:
Q  55 tggtggtggaagatgatgtggaaaaaattaa-gtgttgagagactacggtaaaattttgttccctacttaacccaatggttaaaaactaacttt 147  Q
    ||||||||||||||||||  ||||||| ||  ||||||| |||| | | ||||||| ||||||||| |||| | ||||||||||||||||||||    
T  29314718 tggtggtggaagatgatgaagaaaaaaatagtgtgttgaaagaccatgataaaattgtgttccctatttaatcaaatggttaaaaactaacttt 29314625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 544 - 593
Target Start/End: Complemental strand, 42607128 - 42607079
Alignment:
Q  544 ctttcccatgatgggaaacaattcccctttcccatgctaaatgccaccta 593  Q
    |||||||||| ||||||||||||||||||||||||||||||  |||||||    
T  42607128 ctttcccatggtgggaaacaattcccctttcccatgctaaaccccaccta 42607079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 544 - 584
Target Start/End: Original strand, 29060740 - 29060780
Alignment:
Q  544 ctttcccatgatgggaaacaattcccctttcccatgctaaa 584  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  29060740 ctttcccatggtgggaaacaattcccctttcccatgctaaa 29060780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 529 - 591
Target Start/End: Original strand, 46759248 - 46759310
Alignment:
Q  529 aatggttatgatttgctttcccatgatgggaaacaattcccctttcccatgctaaatgccacc 591  Q
    |||||| | |||| ||||| | |||||||||||||| ||||||||||||| ||||||||||||    
T  46759248 aatggtcaagattagctttgctatgatgggaaacaactcccctttcccatactaaatgccacc 46759310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 544 - 593
Target Start/End: Original strand, 42607813 - 42607862
Alignment:
Q  544 ctttcccatgatgggaaacaattcccctttcccatgctaaatgccaccta 593  Q
    |||||| ||||||||||||||||||||||| ||||||||||  |||||||    
T  42607813 ctttcctatgatgggaaacaattccccttttccatgctaaaccccaccta 42607862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 544 - 589
Target Start/End: Original strand, 44541709 - 44541754
Alignment:
Q  544 ctttcccatgatgggaaacaattcccctttcccatgctaaatgcca 589  Q
    |||||||||| | |||||||||||| ||||||||||||||||||||    
T  44541709 ctttcccatggtcggaaacaattccactttcccatgctaaatgcca 44541754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 544 - 584
Target Start/End: Original strand, 24996684 - 24996724
Alignment:
Q  544 ctttcccatgatgggaaacaattcccctttcccatgctaaa 584  Q
    |||||||||| |||||||||| |||||||||||||||||||    
T  24996684 ctttcccatggtgggaaacaactcccctttcccatgctaaa 24996724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 129 - 181
Target Start/End: Complemental strand, 33686987 - 33686935
Alignment:
Q  129 atggttaaaaactaactttttcacggtgggaaaaactaacatttcccatgcta 181  Q
    |||||||||||||||||||  || ||||||||||| |||| ||||||||||||    
T  33686987 atggttaaaaactaactttcccatggtgggaaaaattaacctttcccatgcta 33686935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 544 - 584
Target Start/End: Original strand, 36845203 - 36845243
Alignment:
Q  544 ctttcccatgatgggaaacaattcccctttcccatgctaaa 584  Q
    |||| |||||||| |||||||||||||||||||||||||||    
T  36845203 cttttccatgatgagaaacaattcccctttcccatgctaaa 36845243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 549 - 592
Target Start/End: Complemental strand, 9122692 - 9122649
Alignment:
Q  549 ccatgatgggaaacaattcccctttcccatgctaaatgccacct 592  Q
    ||||| |||||||||| | |||||||||||||||||||||||||    
T  9122692 ccatggtgggaaacaacttccctttcccatgctaaatgccacct 9122649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 544 - 591
Target Start/End: Complemental strand, 27599258 - 27599211
Alignment:
Q  544 ctttcccatgatgggaaacaattcccctttcccatgctaaatgccacc 591  Q
    |||||||||| |||||||||| |||||||||||||  |||||||||||    
T  27599258 ctttcccatggtgggaaacaactcccctttcccattttaaatgccacc 27599211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 544 - 591
Target Start/End: Original strand, 27600096 - 27600143
Alignment:
Q  544 ctttcccatgatgggaaacaattcccctttcccatgctaaatgccacc 591  Q
    |||||||||| |||||||||| |||||||||||||  |||||||||||    
T  27600096 ctttcccatggtgggaaacaactcccctttcccattttaaatgccacc 27600143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 181
Target Start/End: Complemental strand, 25137474 - 25137421
Alignment:
Q  128 aatggttaaaaactaactttttcacggtgggaaaaactaacatttcccatgcta 181  Q
    ||||||||||||||||||||  || ||||||||||| || | ||||||||||||    
T  25137474 aatggttaaaaactaactttcccatggtgggaaaaattagcctttcccatgcta 25137421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 544 - 584
Target Start/End: Complemental strand, 24995899 - 24995859
Alignment:
Q  544 ctttcccatgatgggaaacaattcccctttcccatgctaaa 584  Q
    |||||||||| |||||||||| ||||||||||||| |||||    
T  24995899 ctttcccatggtgggaaacaactcccctttcccattctaaa 24995859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 485 - 561
Target Start/End: Original strand, 41195308 - 41195384
Alignment:
Q  485 tagtgtagagagactatggtaaaatcagtgtccctctttaattcaatggttatgatttgctttcccatgatgggaaa 561  Q
    |||||| |||||| |||| |||||||| ||| |||||| |||  |||||||  ||||| |||| |||||||||||||    
T  41195308 tagtgtggagagagtatgataaaatcaatgttcctcttgaatctaatggttgagatttacttttccatgatgggaaa 41195384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 90; Significance: 4e-43; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 383 - 584
Target Start/End: Original strand, 43060 - 43259
Alignment:
Q  383 agcaattataatgaaaagttaatatcaaaatcggtggtgccggtggtttattattgatgtctggttgatgattgtaaggttgaagacaaaggggaaaaaa 482  Q
    |||||||| |||||| |||||||  ||||| ||||||||| |||||  | |||||  ||| ||||||||||||||||||||||||| ||||||||| |||    
T  43060 agcaattacaatgaagagttaatgccaaaaccggtggtgctggtggggt-ttatttgtgt-tggttgatgattgtaaggttgaagataaaggggaataaa 43157  T
Q  483 tttagtgtagagagactatggtaaaatcagtgtccctctttaattcaatggttatgatttgctttcccatgatgggaaacaattcccctttcccatgcta 582  Q
    ||||||| | |||||||||  |||||||| ||| ||||||||||| |||||||| ||||| ||||||||||||||||||||| |||||||| |||| |||    
T  43158 tttagtgcaaagagactataataaaatcaatgttcctctttaatttaatggttaagatttactttcccatgatgggaaacaactccccttttccatacta 43257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 90; Significance: 4e-43; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 383 - 584
Target Start/End: Original strand, 30780826 - 30781025
Alignment:
Q  383 agcaattataatgaaaagttaatatcaaaatcggtggtgccggtggtttattattgatgtctggttgatgattgtaaggttgaagacaaaggggaaaaaa 482  Q
    |||||||| |||||| ||||||| ||||||| |||||||| |||||  | |||||  ||| |||||||||||||||||||||||||||||||||||||||    
T  30780826 agcaattacaatgaagagttaatgtcaaaattggtggtgctggtggggt-ttatttgtgt-tggttgatgattgtaaggttgaagacaaaggggaaaaaa 30780923  T
Q  483 tttagtgtagagagactatggtaaaatcagtgtccctctttaattcaatggttatgatttgctttcccatgatgggaaacaattcccctttcccatgcta 582  Q
    || ||||||||||||||||| |||||||| ||| ||| ||||||  || ||| |  |||| ||||||||||||||||||||| || ||||||||||| ||    
T  30780924 ttcagtgtagagagactatgataaaatcaatgttcctttttaatctaacggtaaacatttactttcccatgatgggaaacaactctcctttcccatgtta 30781023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 55 - 181
Target Start/End: Original strand, 32538415 - 32538541
Alignment:
Q  55 tggtggtggaagatgatgtggaaaaaattaagtgttgagagactacggtaaaattttgttccctacttaacccaatggttaaaaactaactttttcacgg 154  Q
    ||||| |||||||||||||| |||||||| ||||||||||||| | | ||| ||| ||||||||||||||  |||||||||||||||||||||| || ||    
T  32538415 tggtgatggaagatgatgtgaaaaaaatttagtgttgagagaccatgataacattatgttccctacttaattcaatggttaaaaactaacttttccatgg 32538514  T
Q  155 tgggaaaaactaacatttcccatgcta 181  Q
    ||||||||| || | ||||||||||||    
T  32538515 tgggaaaaattagcctttcccatgcta 32538541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 54 - 143
Target Start/End: Original strand, 49611471 - 49611560
Alignment:
Q  54 gtggtggtggaagatgatgtggaaaaaattaagtgttgagagactacggtaaaattttgttccctacttaacccaatggttaaaaactaa 143  Q
    ||||||||||||||||  |||||||| ||| ||||||||||||| | ||||||||| ||||||||| |||| | |||||  |||||||||    
T  49611471 gtggtggtggaagatgtggtggaaaatatttagtgttgagagaccatggtaaaattgtgttccctatttaatctaatggccaaaaactaa 49611560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 544 - 592
Target Start/End: Original strand, 11032220 - 11032268
Alignment:
Q  544 ctttcccatgatgggaaacaattcccctttcccatgctaaatgccacct 592  Q
    |||||||||| |||||||| |||||||||||||||| ||||||||||||    
T  11032220 ctttcccatggtgggaaactattcccctttcccatgttaaatgccacct 11032268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 544 - 591
Target Start/End: Complemental strand, 11031478 - 11031431
Alignment:
Q  544 ctttcccatgatgggaaacaattcccctttcccatgctaaatgccacc 591  Q
    |||||||||| |||||||| |||||||||||||||| |||||||||||    
T  11031478 ctttcccatggtgggaaactattcccctttcccatgttaaatgccacc 11031431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 544 - 593
Target Start/End: Complemental strand, 38931361 - 38931312
Alignment:
Q  544 ctttcccatgatgggaaacaattcccctttcccatgctaaatgccaccta 593  Q
    |||||||||| |||||||||||||||||||| |||||||||  |||||||    
T  38931361 ctttcccatggtgggaaacaattcccctttctcatgctaaaccccaccta 38931312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 485 - 561
Target Start/End: Original strand, 194643 - 194719
Alignment:
Q  485 tagtgtagagagactatggtaaaatcagtgtccctctttaattcaatggttatgatttgctttcccatgatgggaaa 561  Q
    ||||||||||| | |||| |||||||| ||| |||||| |||  |||||||  ||||| ||||||||||||||||||    
T  194643 tagtgtagagatagtatgataaaatcaatgttcctcttgaatctaatggttgagatttactttcccatgatgggaaa 194719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 544 - 584
Target Start/End: Complemental strand, 4640575 - 4640535
Alignment:
Q  544 ctttcccatgatgggaaacaattcccctttcccatgctaaa 584  Q
    |||||||||| ||||||||||||||||||| ||||||||||    
T  4640575 ctttcccatggtgggaaacaattcccctttaccatgctaaa 4640535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 544 - 584
Target Start/End: Original strand, 4641763 - 4641803
Alignment:
Q  544 ctttcccatgatgggaaacaattcccctttcccatgctaaa 584  Q
    ||||||| || ||||||||||||||||||||||||||||||    
T  4641763 ctttcccttggtgggaaacaattcccctttcccatgctaaa 4641803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 477 - 561
Target Start/End: Original strand, 45811228 - 45811312
Alignment:
Q  477 aaaaaatttagtgtagagagactatggtaaaatcagtgtccctctttaattcaatggttatgatttgctttcccatgatgggaaa 561  Q
    ||||||| || |||||| |||||||| |||||||| | | |||||| |||| |||||||  ||||| ||||||||||||| ||||    
T  45811228 aaaaaatataatgtagaaagactatgataaaatcaatattcctcttgaatttaatggttgagatttactttcccatgatgagaaa 45811312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 544 - 584
Target Start/End: Original strand, 48835098 - 48835138
Alignment:
Q  544 ctttcccatgatgggaaacaattcccctttcccatgctaaa 584  Q
    |||||||||| ||| ||||||||||||||||||||||||||    
T  48835098 ctttcccatggtggaaaacaattcccctttcccatgctaaa 48835138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 544 - 591
Target Start/End: Original strand, 36272548 - 36272595
Alignment:
Q  544 ctttcccatgatgggaaacaattcccctttcccatgctaaatgccacc 591  Q
    |||||||||| |||||||||| | ||| ||||||||||||||||||||    
T  36272548 ctttcccatggtgggaaacaagttcccattcccatgctaaatgccacc 36272595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 543 - 592
Target Start/End: Complemental strand, 11426901 - 11426852
Alignment:
Q  543 gctttcccatgatgggaaacaattcccctttcccatgctaaatgccacct 592  Q
    ||||||||||| ||||||||  || |||||| ||||||||||||||||||    
T  11426901 gctttcccatggtgggaaactctttcccttttccatgctaaatgccacct 11426852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 539 - 592
Target Start/End: Complemental strand, 29334266 - 29334213
Alignment:
Q  539 atttgctttcccatgatgggaaacaattcccctttcccatgctaaatgccacct 592  Q
    |||| |||||||||| |||||||||| |  || |||||||||||||||||||||    
T  29334266 atttactttcccatggtgggaaacaactatccattcccatgctaaatgccacct 29334213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 181
Target Start/End: Complemental strand, 38468968 - 38468915
Alignment:
Q  128 aatggttaaaaactaactttttcacggtgggaaaaactaacatttcccatgcta 181  Q
    ||||||||||||||||||||  || ||||||||||| || | ||||||||||||    
T  38468968 aatggttaaaaactaactttcccatggtgggaaaaattagcctttcccatgcta 38468915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 539 - 592
Target Start/End: Complemental strand, 43316409 - 43316356
Alignment:
Q  539 atttgctttcccatgatgggaaacaattcccctttcccatgctaaatgccacct 592  Q
    |||| |||||||||| |||||||||| |  || |||||||||||||||||||||    
T  43316409 atttactttcccatggtgggaaacaactatccattcccatgctaaatgccacct 43316356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 181
Target Start/End: Complemental strand, 43755911 - 43755858
Alignment:
Q  128 aatggttaaaaactaactttttcacggtgggaaaaactaacatttcccatgcta 181  Q
    ||||||||||||||||||||  || ||||||||||| || | ||||||||||||    
T  43755911 aatggttaaaaactaactttcccatggtgggaaaaattagcctttcccatgcta 43755858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 544 - 584
Target Start/End: Complemental strand, 30466229 - 30466189
Alignment:
Q  544 ctttcccatgatgggaaacaattcccctttcccatgctaaa 584  Q
    |||||||||| |||||||||| ||||| |||||||||||||    
T  30466229 ctttcccatggtgggaaacaactccccattcccatgctaaa 30466189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 126 - 178
Target Start/End: Complemental strand, 32537709 - 32537657
Alignment:
Q  126 ccaatggttaaaaactaactttttcacggtgggaaaaactaacatttcccatg 178  Q
    ||||||||||||||||||||||  || ||||||||||| || | |||||||||    
T  32537709 ccaatggttaaaaactaactttcccatggtgggaaaaattagcctttcccatg 32537657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 543 - 595
Target Start/End: Complemental strand, 34716472 - 34716420
Alignment:
Q  543 gctttcccatgatgggaaacaattcccctttcccatgctaaatgccacctaga 595  Q
    ||||| |||||||||||||||| || || |||||||||||||  |||||||||    
T  34716472 gcttttccatgatgggaaacaactctccattcccatgctaaaccccacctaga 34716420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 79; Significance: 1e-36; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 383 - 561
Target Start/End: Complemental strand, 28090863 - 28090687
Alignment:
Q  383 agcaattataatgaaaagttaatatcaaaatcggtggtgccggtggtttattattgatgtctggttgatgattgtaaggttgaagacaaaggggaaaaaa 482  Q
    |||||||| |||||| |||||||| ||||||||||||||| |||||  | |||||  ||| ||||||||||||||||||||||||| |||||||||||||    
T  28090863 agcaattacaatgaagagttaataccaaaatcggtggtgctggtggggt-ttatttgtgt-tggttgatgattgtaaggttgaagataaaggggaaaaaa 28090766  T
Q  483 tttagtgtagagagactatggtaaaatcagtgtccctctttaattcaatggttatgatttgctttcccatgatgggaaa 561  Q
    | || |||||| |||||||| |||||||| ||| |||||| |||  |||||||  ||||| ||||||||||||||||||    
T  28090765 tataatgtagaaagactatgataaaatcaatgttcctcttgaatctaatggttgagatttactttcccatgatgggaaa 28090687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 444 - 561
Target Start/End: Original strand, 28091278 - 28091395
Alignment:
Q  444 tggttgatgattgtaaggttgaagacaaaggggaaaaaatttagtgtagagagactatggtaaaatcagtgtccctctttaattcaatggttatgatttg 543  Q
    ||||||||||||||||||||||||| |||||||||||||| || |||||| |||||||| |||||||| ||| |||||| |||  |||||||  |||||     
T  28091278 tggttgatgattgtaaggttgaagataaaggggaaaaaatataatgtagaaagactatgataaaatcaatgttcctcttgaatctaatggttgagattta 28091377  T
Q  544 ctttcccatgatgggaaa 561  Q
    |||||| |||||||||||    
T  28091378 ctttcctatgatgggaaa 28091395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 444 - 561
Target Start/End: Complemental strand, 42345313 - 42345196
Alignment:
Q  444 tggttgatgattgtaaggttgaagacaaaggggaaaaaatttagtgtagagagactatggtaaaatcagtgtccctctttaattcaatggttatgatttg 543  Q
    ||||||||||||||||||||||||| |||||||||||||| || |||||| |||||||| |||||||| ||| |||||| |||  |||| ||  |||||     
T  42345313 tggttgatgattgtaaggttgaagataaaggggaaaaaatataatgtagaaagactatgataaaatcaatgttcctcttgaatctaatgattgagattta 42345214  T
Q  544 ctttcccatgatgggaaa 561  Q
    ||||||||||||||||||    
T  42345213 ctttcccatgatgggaaa 42345196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 444 - 557
Target Start/End: Original strand, 42346461 - 42346574
Alignment:
Q  444 tggttgatgattgtaaggttgaagacaaaggggaaaaaatttagtgtagagagactatggtaaaatcagtgtccctctttaattcaatggttatgatttg 543  Q
    ||||||||||||||||||||||||| |||||||||||||| || |||||| |||||||| |||||||| ||| |||||| |||  |||||||  |||||     
T  42346461 tggttgatgattgtaaggttgaagataaaggggaaaaaatataatgtagaaagactatgataaaatcaatgttcctcttgaatctaatggttgagattta 42346560  T
Q  544 ctttcccatgatgg 557  Q
    ||||||||||||||    
T  42346561 ctttcccatgatgg 42346574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 53 - 176
Target Start/End: Complemental strand, 41348282 - 41348158
Alignment:
Q  53 ggtggtggtggaagatgatgtggaaaaaattaagtgttgagagactacggtaaaattttgttccctacttaacccaatggttaaaaactaactttttcac 152  Q
    ||||||||||||||||||||||| |||||||   ||||||||||| | | ||||||| ||| ||||| |||| | ||||||||||||||||||||  ||     
T  41348282 ggtggtggtggaagatgatgtgggaaaaatttgatgttgagagaccatgataaaattgtgtaccctatttaatctaatggttaaaaactaactttcccat 41348183  T
Q  153 ggt-gggaaaaactaacatttccca 176  Q
    ||| ||||||||||||| |||||||    
T  41348182 ggtggggaaaaactaacctttccca 41348158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 55 - 163
Target Start/End: Complemental strand, 41092309 - 41092200
Alignment:
Q  55 tggtggtggaagatgatgtggaaaaaattaa-gtgttgagagactacggtaaaattttgttccctacttaacccaatggttaaaaactaactttttcacg 153  Q
    ||||||||||||||||||  ||||||| ||  ||||||| |||| | | ||||||| ||||||||| |||| | ||||||||||||||||||||| || |    
T  41092309 tggtggtggaagatgatgaagaaaaaaatagtgtgttgaaagaccatgataaaattgtgttccctatttaatcaaatggttaaaaactaacttttccatg 41092210  T
Q  154 gtgggaaaaa 163  Q
    ||||||||||    
T  41092209 gtgggaaaaa 41092200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 55 - 147
Target Start/End: Original strand, 35759151 - 35759243
Alignment:
Q  55 tggtggtggaagatgatgtggaaaaaattaagtgttgagagactacggtaaaattttgttccctacttaacccaatggttaaaaactaacttt 147  Q
    ||||||||||||||||||||| |||||||   ||||||||||| | | ||||||| ||| ||||| |||| | ||||||||||||||||||||    
T  35759151 tggtggtggaagatgatgtgggaaaaatttgatgttgagagaccatgataaaattgtgtaccctatttaatctaatggttaaaaactaacttt 35759243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 45 - 163
Target Start/End: Complemental strand, 42573725 - 42573607
Alignment:
Q  45 agggggagggtggtggtggaagatgatgtggaaaaaattaagtgttgagagactacggtaaaattttgttccctacttaacccaatggttaaaaactaac 144  Q
    ||||| ||||||||||||||||||||||||| ||| ||| | |||||||||||||   ||| ||  ||||||||| ||||   |||||| |||||||||     
T  42573725 aggggaagggtggtggtggaagatgatgtgggaaagatttaatgttgagagactataataacatcgtgttccctatttaatttaatggtcaaaaactaat 42573626  T
Q  145 tttttcacggtgggaaaaa 163  Q
    ||| ||| |||||||||||    
T  42573625 tttctcatggtgggaaaaa 42573607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 51 - 156
Target Start/End: Complemental strand, 36935771 - 36935666
Alignment:
Q  51 agggtggtggtggaagatgatgtggaaaaaattaagtgttgagagactacggtaaaattttgttccctacttaacccaatggttaaaaactaactttttc 150  Q
    |||||||||||||||||||||||||||||||||   ||||||||||  | | ||||||| ||| ||||| |||| | |||  ||||||| ||||||||||    
T  36935771 agggtggtggtggaagatgatgtggaaaaaatttgatgttgagagatcatgataaaattgtgtaccctatttaatctaattattaaaaattaactttttc 36935672  T
Q  151 acggtg 156  Q
    | ||||    
T  36935671 atggtg 36935666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 51 - 147
Target Start/End: Complemental strand, 30272238 - 30272142
Alignment:
Q  51 agggtggtggtggaagatgatgtggaaaaaattaagtgttgagagactacggtaaaattttgttccctacttaacccaatggttaaaaactaacttt 147  Q
    |||||||||||||||||||||||||||||||||   ||||||||||  |   ||||||| ||| ||||| |||| | |||||||||||| |||||||    
T  30272238 agggtggtggtggaagatgatgtggaaaaaatttgatgttgagagatcataataaaattgtgtaccctatttaatctaatggttaaaaattaacttt 30272142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 62 - 181
Target Start/End: Complemental strand, 42111643 - 42111525
Alignment:
Q  62 ggaagatgatgtggaaaaaattaagtgttgagagactacggtaaaattttgttccctacttaacccaatggttaaaaactaactttttcacggtgggaaa 161  Q
    |||||||||||||||||||||  ||||||||||||| | | ||||||| | |||||||  |||   |||||| |||||||||| ||| ||||||  ||||    
T  42111643 ggaagatgatgtggaaaaaatgtagtgttgagagaccatgataaaattatattccctatctaatttaatggtcaaaaactaac-tttccacggtatgaaa 42111545  T
Q  162 aactaacatttcccatgcta 181  Q
    ||||| | ||||||||||||    
T  42111544 aactagcttttcccatgcta 42111525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 470 - 561
Target Start/End: Original strand, 44835356 - 44835447
Alignment:
Q  470 aaaggggaaaaaatttagtgtagagagactatggtaaaatcagtgtccctctttaattcaatggttatgatttgctttcccatgatgggaaa 561  Q
    |||||| ||||||| || |||||| |||||||| |||||||| |||  ||||| |||| |||||||  ||||| ||||||||||||||||||    
T  44835356 aaagggaaaaaaatataatgtagaaagactatgataaaatcaatgtttctcttaaatttaatggttgagatttactttcccatgatgggaaa 44835447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 470 - 560
Target Start/End: Complemental strand, 44834829 - 44834739
Alignment:
Q  470 aaaggggaaaaaatttagtgtagagagactatggtaaaatcagtgtccctctttaattcaatggttatgatttgctttcccatgatgggaa 560  Q
    |||||||||||||| || |||||| |||||||| |||||||| ||| |||||| |||  |||||||  ||||| |||||||||||| ||||    
T  44834829 aaaggggaaaaaatataatgtagaaagactatgataaaatcaatgttcctcttgaatctaatggttgagatttactttcccatgataggaa 44834739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 544 - 592
Target Start/End: Complemental strand, 43433858 - 43433810
Alignment:
Q  544 ctttcccatgatgggaaacaattcccctttcccatgctaaatgccacct 592  Q
    |||||||||| |||||||  |||||||||||||||| ||||||||||||    
T  43433858 ctttcccatggtgggaaatgattcccctttcccatgttaaatgccacct 43433810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 544 - 591
Target Start/End: Complemental strand, 42345441 - 42345394
Alignment:
Q  544 ctttcccatgatgggaaacaattcccctttcccatgctaaatgccacc 591  Q
    |||||||||| |||||||||| || || ||||||||||||||||||||    
T  42345441 ctttcccatggtgggaaacaactctccattcccatgctaaatgccacc 42345394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 163
Target Start/End: Original strand, 35387381 - 35387485
Alignment:
Q  58 tggtggaagatgatgtggaaaaaattaagtgttgagagactacggtaaaattttgttccctacttaacccaatggttaaaaactaactttttcacggtgg 157  Q
    |||||||||||||||||| ||||||  ||| ||||||||| | | ||||| | |||| ||||  ||| | |||||| ||||||||||||| ||| |||||    
T  35387381 tggtggaagatgatgtggcaaaaatgtagtattgagagac-atgataaaagtgtgtttcctatctaatcaaatggtcaaaaactaactttctcaaggtgg 35387479  T
Q  158 gaaaaa 163  Q
     |||||    
T  35387480 aaaaaa 35387485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 544 - 593
Target Start/End: Original strand, 37563033 - 37563082
Alignment:
Q  544 ctttcccatgatgggaaacaattcccctttcccatgctaaatgccaccta 593  Q
    |||||| |||||| ||||||| ||  ||||||||||||||||||||||||    
T  37563033 ctttcctatgatgagaaacaactcttctttcccatgctaaatgccaccta 37563082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 544 - 593
Target Start/End: Original strand, 42346106 - 42346155
Alignment:
Q  544 ctttcccatgatgggaaacaattcccctttcccatgctaaatgccaccta 593  Q
    ||||||||||||||||||||| || || |||||||||||||  |||||||    
T  42346106 ctttcccatgatgggaaacaactctccattcccatgctaaaccccaccta 42346155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 544 - 593
Target Start/End: Complemental strand, 42914861 - 42914812
Alignment:
Q  544 ctttcccatgatgggaaacaattcccctttcccatgctaaatgccaccta 593  Q
    ||||||||||||||||||| | |||||||||||| | |||||| ||||||    
T  42914861 ctttcccatgatgggaaactactcccctttcccaggttaaatggcaccta 42914812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 544 - 584
Target Start/End: Complemental strand, 37562342 - 37562302
Alignment:
Q  544 ctttcccatgatgggaaacaattcccctttcccatgctaaa 584  Q
    |||||| ||| ||||||||||||| ||||||||||||||||    
T  37562342 ctttcctatggtgggaaacaattctcctttcccatgctaaa 37562302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 544 - 592
Target Start/End: Complemental strand, 44751655 - 44751607
Alignment:
Q  544 ctttcccatgatgggaaacaattcccctttcccatgctaaatgccacct 592  Q
    |||||||||||||||||| || || ||||||||| | ||||||||||||    
T  44751655 ctttcccatgatgggaaagaagtctcctttcccaagttaaatgccacct 44751607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 79; Significance: 1e-36; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 55 - 177
Target Start/End: Complemental strand, 28534901 - 28534779
Alignment:
Q  55 tggtggtggaagatgatgtggaaaaaattaagtgttgagagactacggtaaaattttgttccctacttaacccaatggttaaaaactaactttttcacgg 154  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||| ||||| ||||||||||||| ||  || ||    
T  28534901 tggtggtggaagatgatgtggaaaaaattgagtgttgagagactatggtaaaattttgttccctatttaatccaatagttaaaaactaaccttcccatgg 28534802  T
Q  155 tgggaaaaactaacatttcccat 177  Q
    || ||||||||||||||| ||||    
T  28534801 tgagaaaaactaacattttccat 28534779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 55 - 181
Target Start/End: Complemental strand, 18605137 - 18605011
Alignment:
Q  55 tggtggtggaagatgatgtggaaaaaattaagtgttgagagactacggtaaaattttgttccctacttaacccaatggttaaaaactaactttttcacgg 154  Q
    ||||| ||||||||||||||||||||||| ||||||||||||| | | ||||||| ||||||||||||||  ||||||||||||| |||||||  || ||    
T  18605137 tggtgatggaagatgatgtggaaaaaatttagtgttgagagaccatgataaaattatgttccctacttaattcaatggttaaaaattaactttcccatgg 18605038  T
Q  155 tgggaaaaactaacatttcccatgcta 181  Q
    ||| ||||| || | ||| ||||||||    
T  18605037 tggaaaaaattagccttttccatgcta 18605011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 444 - 554
Target Start/End: Complemental strand, 14336760 - 14336650
Alignment:
Q  444 tggttgatgattgtaaggttgaagacaaaggggaaaaaatttagtgtagagagactatggtaaaatcagtgtccctctttaattcaatggttatgatttg 543  Q
    ||||||||||||||||||||||||| |||||| ||||||| || || ||| ||| |||| |||||||| ||| |||||| |||| |||||||  |||||     
T  14336760 tggttgatgattgtaaggttgaagataaagggaaaaaaatataatgcagaaagattatgataaaatcaatgttcctcttgaatttaatggttgagattta 14336661  T
Q  544 ctttcccatga 554  Q
    ||||| |||||    
T  14336660 ctttctcatga 14336650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 464 - 561
Target Start/End: Original strand, 14337478 - 14337575
Alignment:
Q  464 gaagacaaaggggaaaaaatttagtgtagagagactatggtaaaatcagtgtccctctttaattcaatggttatgatttgctttcccatgatgggaaa 561  Q
    ||||| |||||||||||||| || |||||| |||||||| |||||||| ||| |||||| |||  |||||||  ||||| ||||||||||||||||||    
T  14337478 gaagataaaggggaaaaaatataatgtagaaagactatgataaaatcaatgttcctcttgaatctaatggttgagatttactttcccatgatgggaaa 14337575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 53 - 176
Target Start/End: Complemental strand, 1034859 - 1034735
Alignment:
Q  53 ggtggtggtggaagatgatgtggaaaaaattaagtgttgagagactacggtaaaattttgttccctacttaacccaatggttaaaaactaactttttcac 152  Q
    ||||||||||||||||||||||| |||||||   ||||||||||  | | ||||||| ||| ||||| |||| | ||||||||||||||||||||   |     
T  1034859 ggtggtggtggaagatgatgtgggaaaaatttgatgttgagagatcatgataaaattgtgtaccctatttaatctaatggttaaaaactaactttcctat 1034760  T
Q  153 ggt-gggaaaaactaacatttccca 176  Q
    ||| ||||||||||||| |||||||    
T  1034759 ggtggggaaaaactaacctttccca 1034735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 51 - 163
Target Start/End: Original strand, 10608228 - 10608340
Alignment:
Q  51 agggtggtggtggaagatgatgtggaaaaaattaagtgttgagagactacggtaaaattttgttccctacttaacccaatggttaaaaactaactttttc 150  Q
    ||||||||||||||||||||||||||||| ||  |||| |||||||| |   ||| ||| ||||||||| |||| | |||||| |||||||||||||  |    
T  10608228 agggtggtggtggaagatgatgtggaaaagatctagtgctgagagaccataataacattgtgttccctatttaatctaatggtcaaaaactaactttccc 10608327  T
Q  151 acggtgggaaaaa 163  Q
    | |||||||||||    
T  10608328 atggtgggaaaaa 10608340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 51 - 148
Target Start/End: Complemental strand, 931064 - 930967
Alignment:
Q  51 agggtggtggtggaagatgatgtggaaaaaattaagtgttgagagactacggtaaaattttgttccctacttaacccaatggttaaaaactaactttt 148  Q
    ||||||||||||||||||||||| | ||| ||| ||||||||||||| |   ||| ||| ||||||||| |||| | |||||| ||||||||||||||    
T  931064 agggtggtggtggaagatgatgttggaaagatttagtgttgagagaccataataacattgtgttccctatttaatctaatggtcaaaaactaactttt 930967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 470 - 561
Target Start/End: Original strand, 7159268 - 7159359
Alignment:
Q  470 aaaggggaaaaaatttagtgtagagagactatggtaaaatcagtgtccctctttaattcaatggttatgatttgctttcccatgatgggaaa 561  Q
    ||||| |||||||| || |||||| |||||||| |||||||| ||| |||||| |||  |||||||  ||||| ||||||||||||||||||    
T  7159268 aaaggagaaaaaatataatgtagaaagactatgataaaatcaatgttcctcttgaatctaatggttgagatttactttcccatgatgggaaa 7159359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 474 - 560
Target Start/End: Complemental strand, 7158552 - 7158466
Alignment:
Q  474 gggaaaaaatttagtgtagagagactatggtaaaatcagtgtccctctttaattcaatggttatgatttgctttcccatgatgggaa 560  Q
    |||||||||| || |||||| |||||||| |||||||| ||| |||||| |||  |||||||  ||||| |||||||||||||||||    
T  7158552 gggaaaaaatataatgtagaaagactatgataaaatcaatgttcctcttgaatctaatggttgagatttactttcccatgatgggaa 7158466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 544 - 584
Target Start/End: Original strand, 34035045 - 34035085
Alignment:
Q  544 ctttcccatgatgggaaacaattcccctttcccatgctaaa 584  Q
    |||||||||||||||||||||||| ||||||||||| ||||    
T  34035045 ctttcccatgatgggaaacaattctcctttcccatgttaaa 34035085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 544 - 591
Target Start/End: Original strand, 24126719 - 24126766
Alignment:
Q  544 ctttcccatgatgggaaacaattcccctttcccatgctaaatgccacc 591  Q
    ||||||||||||||||||||| ||||||||||||   |||||||||||    
T  24126719 ctttcccatgatgggaaacaactcccctttcccaaattaaatgccacc 24126766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 181
Target Start/End: Complemental strand, 7635186 - 7635133
Alignment:
Q  128 aatggttaaaaactaactttttcacggtgggaaaaactaacatttcccatgcta 181  Q
    ||||||||||||||||||||  || ||||||||||| || | ||||||||||||    
T  7635186 aatggttaaaaactaactttcccatggtgggaaaaattagcctttcccatgcta 7635133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 181
Target Start/End: Original strand, 18290481 - 18290534
Alignment:
Q  128 aatggttaaaaactaactttttcacggtgggaaaaactaacatttcccatgcta 181  Q
    ||||||||||||||||||||  || ||||||||||| || | ||||||||||||    
T  18290481 aatggttaaaaactaactttcccatggtgggaaaaattagcctttcccatgcta 18290534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 53 - 109
Target Start/End: Original strand, 9428033 - 9428089
Alignment:
Q  53 ggtggtggtggaagatgatgtggaaaaaattaagtgttgagagactacggtaaaatt 109  Q
    |||||||||||||||||||||||  |||||| | ||||||||||  ||| |||||||    
T  9428033 ggtggtggtggaagatgatgtggggaaaatttaatgttgagagatcacgataaaatt 9428089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 75; Significance: 3e-34; HSPs: 28)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 44 - 181
Target Start/End: Complemental strand, 42654983 - 42654846
Alignment:
Q  44 tagggggagggtggtggtggaagatgatgtggaaaaaat-taagtgttgagagactacggtaaaattttgttccctacttaacccaatggttaaaaacta 142  Q
    |||||| |||||||||||||||||| ||||| ||||||  ||||||||||||||| | |||||||||||||||||||||||| |||||||||||||||||    
T  42654983 taggggaagggtggtggtggaagataatgtgaaaaaaaaataagtgttgagagaccatggtaaaattttgttccctacttaatccaatggttaaaaacta 42654884  T
Q  143 actttttcacggtgggaaaaactaacatttcccatgcta 181  Q
    |||||  || ||| |||||||||| | ||||||||||||    
T  42654883 actttcccatggt-ggaaaaactagcctttcccatgcta 42654846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 383 - 584
Target Start/End: Complemental strand, 27123022 - 27122824
Alignment:
Q  383 agcaattataatgaaaagttaatatcaaaatcggtggtgccggtggtttattattgatgtctggttgatgattgtaaggttgaagacaaaggggaaaaaa 482  Q
    |||||||| |||||| |||||||  |||||||| |||||| |||||  | |||||  ||| ||||||||||||||||||||||||| ||||||||| |||    
T  27123022 agcaattacaatgaagagttaatgccaaaatcgatggtgctggtgggat-ttatttgtgt-tggttgatgattgtaaggttgaagataaaggggaataaa 27122925  T
Q  483 tttagtgtagagagactatggtaaaatcagtgtccctctttaattcaatggttatgatttgctttcccatgatgggaaacaattcccctttcccatgcta 582  Q
    ||||||||||||| |||||  |||||||| ||| || |||||||| |||||||| ||||| |||| |||| |||| |||||| ||| || |||||| |||    
T  27122924 tttagtgtagagaaactataataaaatcaatgttcc-ctttaatttaatggttaagatttacttttccataatggaaaacaactcctctgtcccatacta 27122826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 446 - 561
Target Start/End: Original strand, 7625926 - 7626041
Alignment:
Q  446 gttgatgattgtaaggttgaagacaaaggggaaaaaatttagtgtagagagactatggtaaaatcagtgtccctctttaattcaatggttatgatttgct 545  Q
    ||||||||||||||||||||||| |||||||||||||| || |||| | |||||||| |||||||| ||| |||||| |||  |||| ||  ||||| ||    
T  7625926 gttgatgattgtaaggttgaagataaaggggaaaaaatataatgtaaaaagactatgataaaatcaatgttcctcttgaatataatgattgagatttact 7626025  T
Q  546 ttcccatgatgggaaa 561  Q
    ||||||||||||||||    
T  7626026 ttcccatgatgggaaa 7626041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 464 - 561
Target Start/End: Complemental strand, 7625599 - 7625503
Alignment:
Q  464 gaagacaaaggggaaaaaatttagtgtagagagactatggtaaaatcagtgtccctctttaattcaatggttatgatttgctttcccatgatgggaaa 561  Q
    ||||| |||||||||||| | || |||||| |||||||  |||||||| ||| |||||| |||| |||||||  ||||| ||||||||||||||||||    
T  7625599 gaagataaaggggaaaaa-tataatgtagaaagactataataaaatcaatgttcctcttgaatttaatggttgagatttactttcccatgatgggaaa 7625503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 477 - 561
Target Start/End: Original strand, 26688675 - 26688759
Alignment:
Q  477 aaaaaatttagtgtagagagactatggtaaaatcagtgtccctctttaattcaatggttatgatttgctttcccatgatgggaaa 561  Q
    ||||||| || |||||| |||||||| |||||||| ||| |||||| |||  |||||||  ||||| ||||||||||||||||||    
T  26688675 aaaaaatataatgtagaaagactatgataaaatcaatgttcctcttgaatctaatggttgagatttactttcccatgatgggaaa 26688759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 477 - 561
Target Start/End: Original strand, 26958406 - 26958490
Alignment:
Q  477 aaaaaatttagtgtagagagactatggtaaaatcagtgtccctctttaattcaatggttatgatttgctttcccatgatgggaaa 561  Q
    ||||||| || |||||| |||||||| |||||||| ||| |||||| |||  |||||||  ||||| ||||||||||||||||||    
T  26958406 aaaaaatataatgtagaaagactatgataaaatcaatgttcctcttgaatctaatggttgagatttactttcccatgatgggaaa 26958490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 478 - 561
Target Start/End: Complemental strand, 26688279 - 26688196
Alignment:
Q  478 aaaaatttagtgtagagagactatggtaaaatcagtgtccctctttaattcaatggttatgatttgctttcccatgatgggaaa 561  Q
    |||||| || |||||| |||||||| |||||||| ||| |||||| |||  |||||||  ||||| ||||||||||||||||||    
T  26688279 aaaaatataatgtagaaagactatgataaaatcaatgttcctcttgaatctaatggttgagatttactttcccatgatgggaaa 26688196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 478 - 561
Target Start/End: Complemental strand, 26958010 - 26957927
Alignment:
Q  478 aaaaatttagtgtagagagactatggtaaaatcagtgtccctctttaattcaatggttatgatttgctttcccatgatgggaaa 561  Q
    |||||| || |||||| |||||||| |||||||| ||| |||||| |||  |||||||  ||||| ||||||||||||||||||    
T  26958010 aaaaatataatgtagaaagactatgataaaatcaatgttcctcttgaatctaatggttgagatttactttcccatgatgggaaa 26957927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 543 - 593
Target Start/End: Complemental strand, 9142095 - 9142045
Alignment:
Q  543 gctttcccatgatgggaaacaattcccctttcccatgctaaatgccaccta 593  Q
    ||||||||||| |||||||||| | ||||||||||| ||||||||||||||    
T  9142095 gctttcccatggtgggaaacaacttccctttcccatactaaatgccaccta 9142045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 544 - 584
Target Start/End: Complemental strand, 4789567 - 4789527
Alignment:
Q  544 ctttcccatgatgggaaacaattcccctttcccatgctaaa 584  Q
    |||||||||| |||||||||| |||||||||||||||||||    
T  4789567 ctttcccatggtgggaaacaactcccctttcccatgctaaa 4789527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 459 - 526
Target Start/End: Original strand, 6354603 - 6354668
Alignment:
Q  459 aggttgaagacaaaggggaaaaaatttagtgtagagagactatggtaaaatcagtgtccctctttaat 526  Q
    ||||||||||||| ||||||||  | |||||| ||||||||||| ||||||||||||  |||||||||    
T  6354603 aggttgaagacaagggggaaaa--tctagtgtggagagactatgttaaaatcagtgtttctctttaat 6354668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 544 - 591
Target Start/End: Original strand, 1970515 - 1970562
Alignment:
Q  544 ctttcccatgatgggaaacaattcccctttcccatgctaaatgccacc 591  Q
    |||||||||| |||||||||| || || ||||||||||||||||||||    
T  1970515 ctttcccatggtgggaaacaactctccattcccatgctaaatgccacc 1970562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 470 - 552
Target Start/End: Original strand, 14553898 - 14553980
Alignment:
Q  470 aaaggggaaaaaatttagtgtagagagactatggtaaaatcagtgtccctctttaattcaatggttatgatttgctttcccat 552  Q
    |||||||||||||| || |||| | |||||||| |||||||| ||| |||||| |||  |||||||  ||||| |||||||||    
T  14553898 aaaggggaaaaaatataatgtaaaaagactatgataaaatcattgttcctcttaaatctaatggttgagatttactttcccat 14553980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 530 - 584
Target Start/End: Original strand, 26712375 - 26712429
Alignment:
Q  530 atggttatgatttgctttcccatgatgggaaacaattcccctttcccatgctaaa 584  Q
    |||||||  ||| ||||||||||| |||||||||| | |||||||||||||||||    
T  26712375 atggttaaaattagctttcccatggtgggaaacaacttccctttcccatgctaaa 26712429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 530 - 584
Target Start/End: Original strand, 26982113 - 26982167
Alignment:
Q  530 atggttatgatttgctttcccatgatgggaaacaattcccctttcccatgctaaa 584  Q
    |||||||  ||| ||||||||||| |||||||||| | |||||||||||||||||    
T  26982113 atggttaaaattagctttcccatggtgggaaacaacttccctttcccatgctaaa 26982167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 181
Target Start/End: Complemental strand, 3595839 - 3595786
Alignment:
Q  128 aatggttaaaaactaactttttcacggtgggaaaaactaacatttcccatgcta 181  Q
    ||||||||||||||||||||  || ||||||||||| || | ||||||||||||    
T  3595839 aatggttaaaaactaactttcccatggtgggaaaaattagcctttcccatgcta 3595786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 181
Target Start/End: Complemental strand, 7858389 - 7858336
Alignment:
Q  128 aatggttaaaaactaactttttcacggtgggaaaaactaacatttcccatgcta 181  Q
    ||||||||||||||||||||  || ||||||||||| || | ||||||||||||    
T  7858389 aatggttaaaaactaactttcccatggtgggaaaaattagcctttcccatgcta 7858336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 181
Target Start/End: Complemental strand, 8320937 - 8320884
Alignment:
Q  128 aatggttaaaaactaactttttcacggtgggaaaaactaacatttcccatgcta 181  Q
    ||||||||||||||||||||  || ||||||||||| || | ||||||||||||    
T  8320937 aatggttaaaaactaactttcccatggtgggaaaaattagcctttcccatgcta 8320884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 181
Target Start/End: Original strand, 8321373 - 8321426
Alignment:
Q  128 aatggttaaaaactaactttttcacggtgggaaaaactaacatttcccatgcta 181  Q
    ||||||||||||||||||||  || ||||||||||| || | ||||||||||||    
T  8321373 aatggttaaaaactaactttcccatggtgggaaaaattagcctttcccatgcta 8321426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 181
Target Start/End: Original strand, 12330648 - 12330701
Alignment:
Q  128 aatggttaaaaactaactttttcacggtgggaaaaactaacatttcccatgcta 181  Q
    ||||||||||||||||||||  || ||||||||||| || | ||||||||||||    
T  12330648 aatggttaaaaactaactttcccatggtgggaaaaattagcctttcccatgcta 12330701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 476 - 557
Target Start/End: Complemental strand, 14553782 - 14553701
Alignment:
Q  476 gaaaaaatttagtgtagagagactatggtaaaatcagtgtccctctttaattcaatggttatgatttgctttcccatgatgg 557  Q
    |||||||| || |||| | |||||||| |||||||| ||| |||||| |||  |||||||  ||||| ||||||||||||||    
T  14553782 gaaaaaatataatgtacaaagactatgataaaatcattgttcctcttaaatctaatggttgagatttactttcccatgatgg 14553701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 181
Target Start/End: Complemental strand, 24027245 - 24027196
Alignment:
Q  132 gttaaaaactaactttttcacggtgggaaaaactaacatttcccatgcta 181  Q
    ||||||||||||||||| || ||||||||||| || | ||||||||||||    
T  24027245 gttaaaaactaacttttccatggtgggaaaaattagcctttcccatgcta 24027196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 544 - 584
Target Start/End: Complemental strand, 2522729 - 2522689
Alignment:
Q  544 ctttcccatgatgggaaacaattcccctttcccatgctaaa 584  Q
    |||||| ||||||| |||||||| |||||||||||||||||    
T  2522729 ctttcctatgatggaaaacaattaccctttcccatgctaaa 2522689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 543 - 591
Target Start/End: Original strand, 4555389 - 4555437
Alignment:
Q  543 gctttcccatgatgggaaacaattcccctttcccatgctaaatgccacc 591  Q
    ||||||||||| | |||||||| | ||||||||||| ||||||||||||    
T  4555389 gctttcccatggtaggaaacaacttccctttcccatactaaatgccacc 4555437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 544 - 592
Target Start/End: Original strand, 4607137 - 4607185
Alignment:
Q  544 ctttcccatgatgggaaacaattcccctttcccatgctaaatgccacct 592  Q
    ||||| |||| |||||||||| || || |||||||||||||||||||||    
T  4607137 ctttctcatggtgggaaacaactctccattcccatgctaaatgccacct 4607185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 545 - 593
Target Start/End: Complemental strand, 4874630 - 4874582
Alignment:
Q  545 tttcccatgatgggaaacaattcccctttcccatgctaaatgccaccta 593  Q
    |||||||| |||||||||||||  || |||||||||||||| |||||||    
T  4874630 tttcccatcatgggaaacaattttccattcccatgctaaattccaccta 4874582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 544 - 592
Target Start/End: Complemental strand, 32943564 - 32943516
Alignment:
Q  544 ctttcccatgatgggaaacaattcccctttcccatgctaaatgccacct 592  Q
    |||||||||| |||||||||| |  ||||||||||||||||| ||||||    
T  32943564 ctttcccatggtgggaaacaaatatcctttcccatgctaaatcccacct 32943516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 544 - 584
Target Start/End: Complemental strand, 42650804 - 42650764
Alignment:
Q  544 ctttcccatgatgggaaacaattcccctttcccatgctaaa 584  Q
    |||||||||| ||  ||||||||||||||||||||||||||    
T  42650804 ctttcccatggtgaaaaacaattcccctttcccatgctaaa 42650764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 5e-24; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 444 - 561
Target Start/End: Original strand, 46707913 - 46708030
Alignment:
Q  444 tggttgatgattgtaaggttgaagacaaaggggaaaaaatttagtgtagagagactatggtaaaatcagtgtccctctttaattcaatggttatgatttg 543  Q
    ||||||||||||||||||||||||| |||||||||||||| || |||||| |||||||| |||||||| ||| |||||| |||  |||| ||  |||||     
T  46707913 tggttgatgattgtaaggttgaagataaaggggaaaaaatataatgtagaaagactatgataaaatcaatgttcctcttgaatctaatgattgagattta 46708012  T
Q  544 ctttcccatgatgggaaa 561  Q
    ||||||||||||| ||||    
T  46708013 ctttcccatgatgagaaa 46708030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 55 - 163
Target Start/End: Original strand, 39413534 - 39413642
Alignment:
Q  55 tggtggtggaagatgatgtggaaaaaattaagtgttgagagactacggtaaaattttgttccctacttaacccaatggttaaaaactaactttttcacgg 154  Q
    ||||| ||||||||||||||||||||||| ||||| ||||||| | | ||||||| ||||| |||||||| ||||||||||||||||||||||   | ||    
T  39413534 tggtgatggaagatgatgtggaaaaaatttagtgtcgagagaccatgataaaattatgttctctacttaatccaatggttaaaaactaactttcctatgg 39413633  T
Q  155 tgggaaaaa 163  Q
    |||||||||    
T  39413634 tgggaaaaa 39413642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 447 - 561
Target Start/End: Complemental strand, 46707538 - 46707424
Alignment:
Q  447 ttgatgattgtaaggttgaagacaaaggggaaaaaatttagtgtagagagactatggtaaaatcagtgtccctctttaattcaatggttatgatttgctt 546  Q
    |||||||||||| ||||||||| ||| |||||||||| || || ||| |||||||| |||||||| ||| |||||| |||  |||||||  ||||| |||    
T  46707538 ttgatgattgtatggttgaagataaaagggaaaaaatataatgcagaaagactatgataaaatcaatgttcctcttgaatctaatggttgagatttactt 46707439  T
Q  547 tcccatgatgggaaa 561  Q
    ||||||||| |||||    
T  46707438 tcccatgataggaaa 46707424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 54 - 147
Target Start/End: Original strand, 52758621 - 52758714
Alignment:
Q  54 gtggtggtggaagatgatgtggaaaaaattaagtgttgagagactacggtaaaattttgttccctacttaacccaatggttaaaaactaacttt 147  Q
    ||||||||||||||||  |||||||| ||| | ||||||||||||| ||||||||| ||||||||| |||| | |||||  |||||||||||||    
T  52758621 gtggtggtggaagatgtggtggaaaatatttaatgttgagagactatggtaaaattgtgttccctatttaatctaatggccaaaaactaacttt 52758714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 477 - 584
Target Start/End: Original strand, 231983 - 232090
Alignment:
Q  477 aaaaaatttagtgtagagagactatggtaaaatcagtgtccctctttaattcaatggttatgatttgctttcccatgatgggaaacaattcccctttccc 576  Q
    |||||||||||||| ||||||||||| ||| |||| ||| |||| || ||  ||||||||  |||| |||||||||| |||||||||| | |||||||||    
T  231983 aaaaaatttagtgtggagagactatgataagatcaatgttcctcatttatctaatggttaaaatttactttcccatggtgggaaacaacttccctttccc 232082  T
Q  577 atgctaaa 584  Q
    || |||||    
T  232083 atactaaa 232090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 53 - 176
Target Start/End: Complemental strand, 11680414 - 11680290
Alignment:
Q  53 ggtggtggtggaagatgatgtggaaaaaattaagtgttgagagactacggtaaaattttgttccctacttaacccaatggttaaaaactaactttttcac 152  Q
    ||||||||||||||||||||||| ||| ||  |||| |||||||| |   ||| ||| ||||||||| |||| | |||||| |||||||||||||  ||     
T  11680414 ggtggtggtggaagatgatgtgggaaagatctagtgctgagagaccataataacattgtgttccctatttaatctaatggtcaaaaactaactttcccat 11680315  T
Q  153 ggtggga-aaaactaacatttccca 176  Q
    ||||||| ||||||||| |||||||    
T  11680314 ggtgggaaaaaactaacctttccca 11680290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 53 - 176
Target Start/End: Complemental strand, 11688693 - 11688569
Alignment:
Q  53 ggtggtggtggaagatgatgtggaaaaaattaagtgttgagagactacggtaaaattttgttccctacttaacccaatggttaaaaactaactttttcac 152  Q
    ||||||||||||||||||||||| ||| ||  |||| |||||||| |   ||| ||| ||||||||| |||| | |||||| |||||||||||||  ||     
T  11688693 ggtggtggtggaagatgatgtgggaaagatctagtgctgagagaccataataacattgtgttccctatttaatctaatggtcaaaaactaactttcccat 11688594  T
Q  153 ggtggga-aaaactaacatttccca 176  Q
    ||||||| ||||||||| |||||||    
T  11688593 ggtgggaaaaaactaacctttccca 11688569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 55 - 147
Target Start/End: Original strand, 49399474 - 49399566
Alignment:
Q  55 tggtggtggaagatgatgtggaaaaaattaagtgttgagagactacggtaaaattttgttccctacttaacccaatggttaaaaactaacttt 147  Q
    ||||||||||||||||||||| |||||||   ||||||||||| | | ||||||| | | ||||| |||| | ||||||||||||||||||||    
T  49399474 tggtggtggaagatgatgtgggaaaaatttgatgttgagagaccatgataaaattgtataccctatttaatctaatggttaaaaactaacttt 49399566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 470 - 561
Target Start/End: Complemental strand, 30478430 - 30478339
Alignment:
Q  470 aaaggggaaaaaatttagtgtagagagactatggtaaaatcagtgtccctctttaattcaatggttatgatttgctttcccatgatgggaaa 561  Q
    |||||||||||||| || |||||| |||||||| |||||||| ||| |||||| |||  |||| ||  ||||| ||||||||||||||||||    
T  30478430 aaaggggaaaaaatataatgtagaaagactatgataaaatcaatgttcctcttgaatctaatgattgagatttactttcccatgatgggaaa 30478339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 470 - 561
Target Start/End: Complemental strand, 48013438 - 48013347
Alignment:
Q  470 aaaggggaaaaaatttagtgtagagagactatggtaaaatcagtgtccctctttaattcaatggttatgatttgctttcccatgatgggaaa 561  Q
    |||||||||||||| || |||||| |||||||| |||||||| ||| |||||| |||  ||||| |  ||||| ||||||||||||||||||    
T  48013438 aaaggggaaaaaatataatgtagaaagactatgataaaatcaatgttcctcttgaatctaatggatgagatttactttcccatgatgggaaa 48013347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 55 - 147
Target Start/End: Complemental strand, 31634240 - 31634147
Alignment:
Q  55 tggtggtggaagatgatgtggaaaaaattaa-gtgttgagagactacggtaaaattttgttccctacttaacccaatggttaaaaactaacttt 147  Q
    ||||||||||||||||||  ||||||| ||  ||||||| |||| | | ||||||| ||||||||| |||| | ||||||||||||||||||||    
T  31634240 tggtggtggaagatgatgaagaaaaaaatagcgtgttgaaagaccatgataaaattgtgttccctatttaatcaaatggttaaaaactaacttt 31634147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 51 - 163
Target Start/End: Original strand, 25655547 - 25655659
Alignment:
Q  51 agggtggtggtggaagatgatgtggaaaaaattaagtgttgagagactacggtaaaattttgttccctacttaacccaatggttaaaaactaactttttc 150  Q
    ||||||||||||||||||||||||| ||| ||  |||| |||||||| |   ||| ||| |||| |||| |||| | |||||| |||||||||||||  |    
T  25655547 agggtggtggtggaagatgatgtgggaaagatctagtgctgagagaccataataacattgtgtttcctatttaatctaatggtcaaaaactaactttccc 25655646  T
Q  151 acggtgggaaaaa 163  Q
    | |||||||||||    
T  25655647 atggtgggaaaaa 25655659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 51 - 147
Target Start/End: Complemental strand, 53289613 - 53289517
Alignment:
Q  51 agggtggtggtggaagatgatgtggaaaaaattaagtgttgagagactacggtaaaattttgttccctacttaacccaatggttaaaaactaacttt 147  Q
    ||||||||||||||||||||||||| |||||||   |||| |||||| | | ||||||| ||| ||||| |||| | |||| ||||||| |||||||    
T  53289613 agggtggtggtggaagatgatgtgggaaaaatttgatgttcagagaccatgataaaattgtgtaccctatttaatctaatgattaaaaattaacttt 53289517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 51 - 149
Target Start/End: Complemental strand, 3619138 - 3619040
Alignment:
Q  51 agggtggtggtggaagatgatgtggaaaaaattaagtgttgagagactacggtaaaattttgttccctacttaacccaatggttaaaaactaacttttt 149  Q
    ||||||||||||||||||||||||| ||||||| | ||||||||||  | | ||||||| |||  |||| |||| | ||| |||||||  |||||||||    
T  3619138 agggtggtggtggaagatgatgtgggaaaaatttaatgttgagagatcatgataaaattgtgtatcctatttaatctaatagttaaaacttaacttttt 3619040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 53 - 147
Target Start/End: Original strand, 12590113 - 12590207
Alignment:
Q  53 ggtggtggtggaagatgatgtggaaaaaattaagtgttgagagactacggtaaaattttgttccctacttaacccaatggttaaaaactaacttt 147  Q
    ||||||||||||||||||||||| ||| ||  |||| |||||||| |   ||| ||| ||||||||| |||| | |||||| |||||||||||||    
T  12590113 ggtggtggtggaagatgatgtgggaaagatctagtgctgagagaccataataacattgtgttccctatttaatctaatggtcaaaaactaacttt 12590207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 544 - 584
Target Start/End: Complemental strand, 25970153 - 25970113
Alignment:
Q  544 ctttcccatgatgggaaacaattcccctttcccatgctaaa 584  Q
    |||||||||| |||||||||| |||||||||||||||||||    
T  25970153 ctttcccatggtgggaaacaactcccctttcccatgctaaa 25970113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 51 - 163
Target Start/End: Complemental strand, 46764392 - 46764280
Alignment:
Q  51 agggtggtggtggaagatgatgtggaaaaaattaagtgttgagagactacggtaaaattttgttccctacttaacccaatggttaaaaactaactttttc 150  Q
    ||||||||||||||||||||||||| ||| ||  |||| |||||||| |   ||| ||| |||| |||| ||||   |||||| |||||||||||||  |    
T  46764392 agggtggtggtggaagatgatgtgggaaagatctagtgctgagagaccataataacattgtgtttcctatttaatttaatggtcaaaaactaactttccc 46764293  T
Q  151 acggtgggaaaaa 163  Q
    | |||||||||||    
T  46764292 atggtgggaaaaa 46764280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 470 - 557
Target Start/End: Original strand, 30478811 - 30478898
Alignment:
Q  470 aaaggggaaaaaatttagtgtagagagactatggtaaaatcagtgtccctctttaattcaatggttatgatttgctttcccatgatgg 557  Q
    |||||||||||||| || ||||||  ||||||| |||||||| ||| |||||| |||  |||| ||  ||||| ||||||||||||||    
T  30478811 aaaggggaaaaaatataatgtagaaggactatgataaaatcaatgttcctcttgaatctaatgattgagatttactttcccatgatgg 30478898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 544 - 591
Target Start/End: Complemental strand, 36450775 - 36450728
Alignment:
Q  544 ctttcccatgatgggaaacaattcccctttcccatgctaaatgccacc 591  Q
    |||||||||| ||| |||||| |||||||||||||||||||| |||||    
T  36450775 ctttcccatggtggaaaacaactcccctttcccatgctaaataccacc 36450728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 544 - 591
Target Start/End: Complemental strand, 47376899 - 47376852
Alignment:
Q  544 ctttcccatgatgggaaacaattcccctttcccatgctaaatgccacc 591  Q
    ||||||||||||||||||||| ||||||||||||   |||||||||||    
T  47376899 ctttcccatgatgggaaacaactcccctttcccaaattaaatgccacc 47376852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 544 - 578
Target Start/End: Complemental strand, 34371509 - 34371475
Alignment:
Q  544 ctttcccatgatgggaaacaattcccctttcccat 578  Q
    |||||||||| ||||||||||||||||||||||||    
T  34371509 ctttcccatggtgggaaacaattcccctttcccat 34371475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 181
Target Start/End: Complemental strand, 5235436 - 5235383
Alignment:
Q  128 aatggttaaaaactaactttttcacggtgggaaaaactaacatttcccatgcta 181  Q
    ||||||||||||||||||||  || ||||||||||| || | ||||||||||||    
T  5235436 aatggttaaaaactaactttcccatggtgggaaaaattagcctttcccatgcta 5235383  T

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Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 181
Target Start/End: Complemental strand, 20175032 - 20174979
Alignment:
Q  128 aatggttaaaaactaactttttcacggtgggaaaaactaacatttcccatgcta 181  Q
    ||||||||||||||||||||  || ||||||||||| || | ||||||||||||    
T  20175032 aatggttaaaaactaactttcccatggtgggaaaaattagcctttcccatgcta 20174979  T

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Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 544 - 593
Target Start/End: Original strand, 23425208 - 23425257
Alignment:
Q  544 ctttcccatgatgggaaacaattcccctttcccatgctaaatgccaccta 593  Q
    |||||||||| |||||||||| || || ||||||| ||||||||||||||    
T  23425208 ctttcccatggtgggaaacaactctccattcccatactaaatgccaccta 23425257  T

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Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 544 - 593
Target Start/End: Original strand, 25970804 - 25970853
Alignment:
Q  544 ctttcccatgatgggaaacaattcccctttcccatgctaaatgccaccta 593  Q
    ||||| |||| |||||||||| |||| |||||||| ||||||||||||||    
T  25970804 ctttctcatggtgggaaacaactcccttttcccatactaaatgccaccta 25970853  T

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Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 544 - 584
Target Start/End: Complemental strand, 22499145 - 22499105
Alignment:
Q  544 ctttcccatgatgggaaacaattcccctttcccatgctaaa 584  Q
    |||||||||||||| ||||||||| ||||||||||| ||||    
T  22499145 ctttcccatgatggaaaacaattctcctttcccatgttaaa 22499105  T

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Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 544 - 592
Target Start/End: Complemental strand, 38009331 - 38009283
Alignment:
Q  544 ctttcccatgatgggaaacaattcccctttcccatgctaaatgccacct 592  Q
    |||| ||||| ||||||||||||  ||||||||||||||||| ||||||    
T  38009331 cttttccatggtgggaaacaattatcctttcccatgctaaatcccacct 38009283  T

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Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 544 - 592
Target Start/End: Original strand, 39652060 - 39652108
Alignment:
Q  544 ctttcccatgatgggaaacaattcccctttcccatgctaaatgccacct 592  Q
    |||||||||| || ||||||| || || |||||||||||||||||||||    
T  39652060 ctttcccatggtgagaaacaactctccattcccatgctaaatgccacct 39652108  T

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Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 545 - 593
Target Start/End: Complemental strand, 47523265 - 47523217
Alignment:
Q  545 tttcccatgatgggaaacaattcccctttcccatgctaaatgccaccta 593  Q
    |||||||| |||||||| || |||||||||| | |||||||||||||||    
T  47523265 tttcccattatgggaaagaactcccctttcctaggctaaatgccaccta 47523217  T

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Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 543 - 591
Target Start/End: Original strand, 55514354 - 55514402
Alignment:
Q  543 gctttcccatgatgggaaacaattcccctttcccatgctaaatgccacc 591  Q
    ||||||||||| |||||||||| |  |||||||||||||||||| ||||    
T  55514354 gctttcccatggtgggaaacaactttcctttcccatgctaaatggcacc 55514402  T

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Target: scaffold0180 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 51 - 147
Target Start/End: Original strand, 23000 - 23096
Alignment:
Q  51 agggtggtggtggaagatgatgtggaaaaaattaagtgttgagagactacggtaaaattttgttccctacttaacccaatggttaaaaactaacttt 147  Q
    ||||||||||||||||||||||||  ||||||| ||||||||||||| | | ||||||| ||||||||| |||| | ||||||| ||||||||||||    
T  23000 agggtggtggtggaagatgatgtgacaaaaatttagtgttgagagaccatgataaaattatgttccctatttaatctaatggttcaaaactaacttt 23096  T

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Target: scaffold0069 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 45 - 99
Target Start/End: Original strand, 1840 - 1894
Alignment:
Q  45 agggggagggtggtggtggaagatgatgtggaaaaaattaagtgttgagagacta 99  Q
    ||||| ||||||||||||||||||||||||| ||| ||| |||||||||||||||    
T  1840 aggggaagggtggtggtggaagatgatgtgggaaatatttagtgttgagagacta 1894  T

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Target: scaffold0155 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 55 - 163
Target Start/End: Complemental strand, 17476 - 17367
Alignment:
Q  55 tggtggtggaagatgatgtggaaaaaattaa-gtgttgagagactacggtaaaattttgttccctacttaacccaatggttaaaaactaactttttcacg 153  Q
    ||||||||||||||||||  ||||||| ||  ||||||| |||| | | ||||||| ||||||||| || | | ||||||||||||||||||||  || |    
T  17476 tggtggtggaagatgatgaagaaaaaaatagtgtgttgaaagaccatgataaaattgtgttccctatttgatcaaatggttaaaaactaactttcccatg 17377  T
Q  154 gtgggaaaaa 163  Q
    ||||||||||    
T  17376 gtgggaaaaa 17367  T

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Target: scaffold0150 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0150
Description:

Target: scaffold0150; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 549 - 591
Target Start/End: Complemental strand, 14054 - 14012
Alignment:
Q  549 ccatgatgggaaacaattcccctttcccatgctaaatgccacc 591  Q
    ||||| |||||||||| |||||||||||||||||||| |||||    
T  14054 ccatggtgggaaacaactcccctttcccatgctaaatcccacc 14012  T

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Target: scaffold2003 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold2003
Description:

Target: scaffold2003; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 539 - 592
Target Start/End: Original strand, 527 - 580
Alignment:
Q  539 atttgctttcccatgatgggaaacaattcccctttcccatgctaaatgccacct 592  Q
    |||| |||| ||||| |||||||||| |||||||||||||||| ||| ||||||    
T  527 atttacttttccatggtgggaaacaactcccctttcccatgcttaatcccacct 580  T

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Target: scaffold0508 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 181
Target Start/End: Complemental strand, 4195 - 4142
Alignment:
Q  128 aatggttaaaaactaactttttcacggtgggaaaaactaacatttcccatgcta 181  Q
    ||||||||||||||||||||  || ||||||||||| || | ||||||||||||    
T  4195 aatggttaaaaactaactttcccatggtgggaaaaattagcctttcccatgcta 4142  T

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