View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8091_high_34 (Length: 243)
Name: NF8091_high_34
Description: NF8091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8091_high_34 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-128; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-128
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 5509579 - 5509821
Alignment:
| Q |
1 |
aatccatgaaaaagcttggatttttcaaccataacaatatcataaacattgctaccattgtcccaaaagagagaaaaatcactactagaaaactttcagt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
5509579 |
aatccatgaaaaagcttggatttttcaaccataacaatatcataaacattgctaccattgtcccaaaagagagaaaaatcactattagaaaactttcagt |
5509678 |
T |
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| Q |
101 |
taccacaatccctataaaaccaagcccaattccagaaattgctcaaccccctttggatttccctgctggttcaccttatccagctccttacaatgtacca |
200 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5509679 |
taccacaatccctataaaaccaaccccaattccagaaattgctcaaccccctttggatttccctgctggttcaccttatccagctccttacaatgtacca |
5509778 |
T |
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| Q |
201 |
aattcaaaaccattaccacctttagctcaaatagtttcatctc |
243 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
5509779 |
aatccaaaaccattaccacctttagctcaaatagtttcatctc |
5509821 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 82; Significance: 8e-39; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 20432883 - 20432989
Alignment:
| Q |
1 |
aatccatgaaaaagcttggatttttcaaccataacaatatcataaacattgctaccattgtcccaaaagagagaaaaatcactactagaaaactttcagt |
100 |
Q |
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||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |
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| T |
20432883 |
aatccatgaaaaagcttggatttttcagccac--caatatcataaacattgctaccattgtaccaaaagagataaaaatcactactagaaaactttcagt |
20432980 |
T |
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| Q |
101 |
taccacaat |
109 |
Q |
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| T |
20432981 |
taccacaat |
20432989 |
T |
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