View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8091_high_35 (Length: 243)
Name: NF8091_high_35
Description: NF8091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8091_high_35 |
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Alignment Details
Target: chr2 (Bit Score: 149; Significance: 8e-79; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 18873865 - 18873638
Alignment:
| Q |
1 |
caacacctgaccaatgtgcatgcttctacgtatgatctgtattagttgctcacacttgatgtgtcagaaaccggtgcgaaagaagnnnnnnnnn-tatta |
99 |
Q |
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| T |
18873865 |
caacacctggccaatgtacatgcttctacgtatgatttgtattagttgctcatttttgatgtgtcagaaaccgatgcgaaagaagaaaaaaagaatatta |
18873766 |
T |
|
| Q |
100 |
tataaatttataaactagggacactttgttgggaaggttccccactaaacagttatttgtgccttgaattttgcttcttgcttgcttgtgagggctccat |
199 |
Q |
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| T |
18873765 |
tataaatttataaactagggacactttgtagggaaggttccccgctaaacagttatttgtgccttgaattttgcttcttgcttgcttgtgagggctccat |
18873666 |
T |
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| Q |
200 |
-gatgattttgtactccaagttcgttgt |
226 |
Q |
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| T |
18873665 |
ggatgattttgtactccaagttcgttgt |
18873638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 84
Target Start/End: Original strand, 16034970 - 16035046
Alignment:
| Q |
8 |
tgaccaatgtgcatgcttctacgtatgatctgtattagttgctcacacttgatgtgtcagaaaccggtgcgaaagaa |
84 |
Q |
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| T |
16034970 |
tgaccagtgtgcatgcctatacgtacgagccggattagtcgctcaccattgatgagtcggaaaccggtgcgaaagaa |
16035046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 82
Target Start/End: Complemental strand, 8612047 - 8611973
Alignment:
| Q |
8 |
tgaccaatgtgcatgcttctacgtatgatctgtattagttgctcacacttgatgtgtcagaaaccggtgcgaaag |
82 |
Q |
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| T |
8612047 |
tgaccagtgtgcatgcttctacgcatgaaccggattagtcgcccacctttggtgggtcagaaaccggtgcgaaag |
8611973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 82
Target Start/End: Original strand, 12705048 - 12705122
Alignment:
| Q |
8 |
tgaccaatgtgcatgcttctacgtatgatctgtattagttgctcacacttgatgtgtcagaaaccggtgcgaaag |
82 |
Q |
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| T |
12705048 |
tgaccagtgtgcatgcttctacgcatgaaccggattagtcgcccacctttggtgggtcagaaaccggtgcgaaag |
12705122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 14728127 - 14728191
Alignment:
| Q |
18 |
gcatgcttctacgtatgatctgtattagttgctcacacttgatgtgtcagaaaccggtgcgaaag |
82 |
Q |
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| T |
14728127 |
gcatgcctctacgcatgagccggattagttgctcacctttgatgggtcggaaaccggtgcgaaag |
14728191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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