View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8091_high_42 (Length: 238)
Name: NF8091_high_42
Description: NF8091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8091_high_42 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 38971558 - 38971366
Alignment:
| Q |
1 |
ccatgcataggggatcattaagggatagattgtttacacagtcacacacaacttgagtgtattgcaaatccaaaataagattttatatagttccatatca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38971558 |
ccatgcataggggatcattaagggatagattgtttacacagtcacacacaacttgagtgtattgcaaatccaaaataagattttatatagttccatatca |
38971459 |
T |
|
| Q |
101 |
atatatgagaacaaataaggtcagaataaattactactaagttataaacataagaatatatttagacacaaatctcatatacacacacatatg |
193 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38971458 |
atatatgagaacaaataaggtcagaataaattactactaagttataaacataagaatatatttagacacaaatctcatatacacacacatatg |
38971366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 41791474 - 41791400
Alignment:
| Q |
1 |
ccatgcataggggatcattaagggatagattgtttacacagtcacacacaacttgagtgtattgcaaatccaaaa |
75 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41791474 |
ccatgcataggggatcattaagggatagattgtttacacagtcacacacaacttgagtgtattgcaaatccaaaa |
41791400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 112; Significance: 9e-57; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 47762289 - 47762469
Alignment:
| Q |
1 |
ccatgcataggggatcattaagggatagattgtttacacagtcacacacaacttgagtgtattgcaaatccaaaataagattttatat----------ag |
90 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
47762289 |
ccatgcatagggggtcattaagggatagattgttaacactgtcacacacaacttgagtgtattgcaaatccaaaataagattttatatatatagttccat |
47762388 |
T |
|
| Q |
91 |
ttccatatcaatatatgagaacaaataag---gtcagaataaattactactaagttataaacataagaatatatttagaca |
168 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47762389 |
ttccatatcaatatatgagaacaaataagaaagtcagaataaactactactaagttataaacataagaatatatttagaca |
47762469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University