View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8091_high_8 (Length: 580)
Name: NF8091_high_8
Description: NF8091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8091_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 523; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 523; E-Value: 0
Query Start/End: Original strand, 18 - 564
Target Start/End: Original strand, 36811296 - 36811842
Alignment:
| Q |
18 |
attcaatctgtcaaaaaacgtggaatgaaatcagagtttgtaggttcatgtatagaaaattggactaaaaaatggttctctaaagtcacacttggaattg |
117 |
Q |
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| T |
36811296 |
attcaatctgtcaaaaaacgtggaatgaaatcagagtttgtaggttcatgtatagaaaattggactaaaaaatggttctctaaagtcacacttggaattg |
36811395 |
T |
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| Q |
118 |
atccaaatgtgacacagaaacacatggcaattcagttacataaagtttcaaccgagtgtttgattaaaatgcttccaactgaagaaaattctgtctcttg |
217 |
Q |
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| T |
36811396 |
atccaaatgtgacacagaaacacatgccaattcagttacataaagtttcaaccgagtgtttgattaaaatgcttccaactgaagaaaattctgtctcttg |
36811495 |
T |
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| Q |
218 |
caattttttgcttcacctgttgaaggcaggtatgatgttgaaattcaattatgagttgttgtgtgtgctagagacaagagtggttttgattttggagcag |
317 |
Q |
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| T |
36811496 |
caattttttgcttcacctgttgaaggcaggtatgatgttgaaaatcaatcatgagttgttgtgtgagctagagacaagagtggttttgattttggagcag |
36811595 |
T |
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| Q |
318 |
tgttgtgttcaagatcttttggttaagaatcaaggagataaagattctttgtatgatgttgatgttgttgttaaagtgttacaatcttatgttcttggca |
417 |
Q |
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| T |
36811596 |
tgttgtgttcaagatcttttggttaagaatcaaggagataaagattctttgtatgatgttgatgttgttgttaaagtgttacaatcttatgttcttggca |
36811695 |
T |
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| Q |
418 |
tttcaagtaattcggctgcaaaagttcacattgttggaaagttggtggatggttatctatcacaagttgcaagggatcagaagctcacagtggaaagttt |
517 |
Q |
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| T |
36811696 |
tttcaagtaattctgctgcaaaagttcacattgttggaaggttggtggatggttatctatcacaagttgcaagggatcagaagctcacagtggaaagttt |
36811795 |
T |
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| Q |
518 |
caaattgcttgttgaagtattgccacaaaatgctagagatagtgatg |
564 |
Q |
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| T |
36811796 |
caaattgcttgttgaagtattgccacaaaatgctagagatagtgatg |
36811842 |
T |
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