View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8091_low_1 (Length: 968)
Name: NF8091_low_1
Description: NF8091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8091_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 363; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 9 - 470
Target Start/End: Complemental strand, 48020847 - 48020371
Alignment:
| Q |
9 |
gtttggtgttccaacaattgaccatttgacccttgtaagaa-----------------caaaacaacataggattattaaggattaaggattcaggacaa |
91 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || | || |
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| T |
48020847 |
gtttggtgttccaacaattgaccatttgacccttgtaagaacaaattaatccaacaaacaaaacaacataggattattaaggattaagga--caatagaa |
48020750 |
T |
|
| Q |
92 |
tagnnnnnnncaaagaagtagtgggagtattggaattaggagtaccaaccaaacaaaccataatgacacatttctcatttgcaaaaaacatctccttata |
191 |
Q |
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| T |
48020749 |
aaagacaaaacaaagaagtagtggtagtattggaattaggagtaccaaccaaacaaaccataatgacacatttctcatttgcaaaaaacatctccttata |
48020650 |
T |
|
| Q |
192 |
gtcacaacgttcctgccaacttcctcatcatttccactctttctctctctagaaaatagtacactcaccttctttttattctctgctctataactagaaa |
291 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48020649 |
gtcacaacgttcctgccaacttcctcatcatttccactctttctctctctagaaaatagtacactcaccttctttttattctctgctctataactagaaa |
48020550 |
T |
|
| Q |
292 |
cattgcctaagaaaaacagagtgaaagagaaacaatggcagctggtgaaagtggtaaagttgatcattttcaacctcatcctgtcaaagaacaacttact |
391 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48020549 |
cattgcctaagaaaaacagagtgaaagagaaacaatggcagctggtgaaagtggtaaagttgatcattttcaacctcatcctgtcaaagaacaacttact |
48020450 |
T |
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| Q |
392 |
gttgattgctgtgttaggagctcaccttcatggcgtaagtcacccattttgttgtaatttgcttttcatgtaataccca |
470 |
Q |
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| T |
48020449 |
gttgattgctgtgttaggagctcaccttcatggcgtaagtaacccattttgttgtaatttgcttttcatgtaataccca |
48020371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 737 - 950
Target Start/End: Complemental strand, 48020104 - 48019891
Alignment:
| Q |
737 |
gaaaactgtaggtggaaaaagctgaaatgattcaaacactgctttttgttgctggaatcaacactctgttgcagacatggcttggaactaggctcccagt |
836 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48020104 |
gaaaactgtaggtggaaaaagctgaaatgattcaaacactgctttttgttgctggaatcaacactctgttgcagacatggcttggaactaggctcccagt |
48020005 |
T |
|
| Q |
837 |
ggttataggagcatcttttgctttcattattccagctatttctgtggcattctcttccagaatgagtgtattccttaatcctcgtcaggtctgtctgtgt |
936 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48020004 |
ggttataggagcatcttttgctttcattattccagctatttctgtggcattctcttccagaatgagtgtattccttaatcctcgtcaggtctgtctgtgt |
48019905 |
T |
|
| Q |
937 |
aaccatgctgttct |
950 |
Q |
| |
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|||||||||||||| |
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| T |
48019904 |
aaccatgctgttct |
48019891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 108; E-Value: 1e-53
Query Start/End: Original strand, 531 - 642
Target Start/End: Complemental strand, 48020309 - 48020198
Alignment:
| Q |
531 |
cagctgaagggatttttcttgggtttcagcactaccttgtaatgcttggaaccattgtcattgtttccactattcttgttcctttgatgggtggtggcaa |
630 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48020309 |
cagctgaagggatttttcttgggtttcaacactaccttgtaatgcttggaaccattgtcattgtttccactattcttgttcctttgatgggtggtggcaa |
48020210 |
T |
|
| Q |
631 |
tgtaatcatcaa |
642 |
Q |
| |
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|||||||||||| |
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|
| T |
48020209 |
tgtaatcatcaa |
48020198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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