View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8091_low_10 (Length: 583)
Name: NF8091_low_10
Description: NF8091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8091_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 553; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 553; E-Value: 0
Query Start/End: Original strand, 11 - 571
Target Start/End: Original strand, 42149970 - 42150530
Alignment:
| Q |
11 |
tagcagagatacaaattatgataaagccattagccatagataacaattaagaaggcaaccacagcatatagtaaataaatgacacttgcaacaaacaaac |
110 |
Q |
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| T |
42149970 |
tagcagagatacaaattatgataaagccattagccatagataacaattaagaaggcaaccacagcatatagtaaataaatgacacttgcaacaaacaaac |
42150069 |
T |
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| Q |
111 |
tcaaactaaataacaaatacaaccaaggtagtgtatggcatatgaaaagaatggaacttcatatctttgcttccgttctatgcaatgaagtcaaaatgta |
210 |
Q |
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| T |
42150070 |
tcaaactaaataacaaatacaaccaaggtagtgtatggcatatgaaaagaatggaacttgatatctttgcttccgttctatgcaatgaagtcaaaatgta |
42150169 |
T |
|
| Q |
211 |
taagcactccgtttcttcaagtcatgttttatttttaacacgtatcgaacattttctgttctgttctaacttgtctgccaaacattagcttatatttttc |
310 |
Q |
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| T |
42150170 |
taagcactccgtttcttcaagtcatgttttatttttaacacgtatcgaacattttctgttctgttctaacttgtctgccaaacattagcttatatttttc |
42150269 |
T |
|
| Q |
311 |
aaccggaaagacaaataatttgggacaacataaatactattctgttttgtgaaatggcgtcagtaattacaatttaatgtaacaggctataataaaatat |
410 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42150270 |
aaccggaaagacgaataatttgggacaacataaatactattctgttttgtgaaatggcgtcagtaattacaatttaatgtaacaggctataataaaatat |
42150369 |
T |
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| Q |
411 |
atgagaatctagagcacttacttaggcaacccaaatacttgacagcgcaatcattttcaaacaagtggatatcagctcatggtgcacatatcacaaaaag |
510 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42150370 |
atgagaatctagagcacttacttaggcaacccaaatacttgacagcgcaatcattttcaaacaagtggatatcagctcatggtgcacatatcacaaaaag |
42150469 |
T |
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| Q |
511 |
aataagaagaataaataccagacatgttttctatggatttaactcttctaaagtgagaagt |
571 |
Q |
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| T |
42150470 |
aataagaagaataaataccagacatgttttctatggatttaactcttctaaagtgagaagt |
42150530 |
T |
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