View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8091_low_13 (Length: 483)
Name: NF8091_low_13
Description: NF8091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8091_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 18 - 474
Target Start/End: Original strand, 43666807 - 43667259
Alignment:
| Q |
18 |
attactagcacttcaatttgaggatgattgaaaaagggatgatttggaagaataactgattggcaattgaaaacagatggataaggatagactagtagta |
117 |
Q |
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| T |
43666807 |
attactagcacttcaatttgaggatgattgaaaaagggatgatttggaagaatagctgattggcaattgaaaacagatggataaggatagactagtagta |
43666906 |
T |
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| Q |
118 |
gtaataatgcaatgcaattcaatgaaaggttttatgaattggtgaattcaagggtgattgtaaattttctatcaggaggtttttaatgatattaagtgtg |
217 |
Q |
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| T |
43666907 |
gtaat---gcaatgcaattcaatgaaaggttttatgaattggtgaattcaagggtgattgtaaattttctatctggaggtttttaatgatattaagtgtg |
43667003 |
T |
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| Q |
218 |
cacatatatcaatcagtgctccttatccatgttcacttcaaggaaaatgaatttgcatgtaactcaataaaattaccaatggtatttgtggatctagact |
317 |
Q |
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| T |
43667004 |
cacatatatcaatcagtgctctttatccatgttcagttcaaggaaaatgaatttgcatgtaactcaataaaattaccaatggtatttgtggatct-gact |
43667102 |
T |
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| Q |
318 |
ttaattccttaccggtaaaacttacaaatgcatttctttaagtgtttgttgtatggttcttagaatcttaactatcaatgttatactcaaattcatattt |
417 |
Q |
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| T |
43667103 |
ttaattccttaccggtaaaacttacaaatgcatttctttaagtgtttgttgtatggttcttagaatcttaactatcaatgttatactcaaattcatattt |
43667202 |
T |
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| Q |
418 |
tctcaaggtctgtaattataacaacacaaaaaatgcattacgaatcattagtattat |
474 |
Q |
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| T |
43667203 |
tctcaaggtctgtaattataacaacacaaaaaatgtattacgaatcattagtattat |
43667259 |
T |
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