View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8091_low_15 (Length: 463)
Name: NF8091_low_15
Description: NF8091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8091_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 208 - 452
Target Start/End: Complemental strand, 35609594 - 35609350
Alignment:
| Q |
208 |
tacaagattcagtacaagaattaaatcataaccattttcttcttcttctactactagttgtagttatgattatgaatgaatcttatgatcagaacataca |
307 |
Q |
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| T |
35609594 |
tacaagattcagtacaagaattaaatcataaccattttcttcttcttctactactagttgtagttatgattatgaatgaatcttatgatcagaacataca |
35609495 |
T |
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| Q |
308 |
catgtcggtgcagctagctagagagacctaaatcagtacttcaaatttccaccatcgatctactttaccttaactcataaagtactgcaaattattaact |
407 |
Q |
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| T |
35609494 |
catgtcggtgcagctagctagagagacctaaatcagtacttcaaatttccaccatcgatctactttaccttaactcataaagtactgcaaattattaact |
35609395 |
T |
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| Q |
408 |
ccaaacccatctcaacaataatcttcaccaccatggaacgtctct |
452 |
Q |
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| T |
35609394 |
ccaaacccatctcaacaataatcttcaccaccatggaacgtctct |
35609350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 19 - 251
Target Start/End: Complemental strand, 35609822 - 35609594
Alignment:
| Q |
19 |
gtctcacctttattaaaaagttaaatgcaatctaaatttggatatgtcagcatattcataattgagacaaatatcttggccaagcatattcaatatatcc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
35609822 |
gtctcacctttattaaaaagttaaatgcaatctaaatttggatatgtcagcatattcataattgagacaaatatcttggccaagcatattca--atatcc |
35609725 |
T |
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| Q |
119 |
accaattatattaacagtaatccgacgaaaattgaaataatatagactatataataaagcgcatgcttcacaaatacactaatgtttcgtacaagattca |
218 |
Q |
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| T |
35609724 |
accaattatattaacagtaatccgacgaaaattgaaataatatagac--tataataaagcgtatgcttcacaaatacactaatgtttcgtacaagattca |
35609627 |
T |
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| Q |
219 |
gtacaagaattaaatcataaccattttcttctt |
251 |
Q |
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| T |
35609626 |
gtacaagaattaaatcataaccattttcttctt |
35609594 |
T |
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