View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8091_low_17 (Length: 458)
Name: NF8091_low_17
Description: NF8091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8091_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 336; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 340
Target Start/End: Original strand, 47468390 - 47468729
Alignment:
| Q |
1 |
tacatcaagatgaaaattataaacagattacaaaggtgacataacacaaagaaagttgtaggaagtaaccactcaacccttaatgattgttttacttgaa |
100 |
Q |
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| T |
47468390 |
tacatcaagatgaaaattataaacagattacaaaggtgacataacacaaagaaagttgtaggaagtaaccactcaacccttaatgtttgttttacttgaa |
47468489 |
T |
|
| Q |
101 |
gttatttatttgaattttgagagttatcaaaccgaagttatgaaatcgtgaaataagaccgaagtttttctaagttctgcataaaaaggaaatgacttaa |
200 |
Q |
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| T |
47468490 |
gttatttatttgaattttgagagttatcaaaccgaagttatgaaatcgtgaaataagaccgaagtttttctaagttctgcataaaaaggaaatgacttaa |
47468589 |
T |
|
| Q |
201 |
ctctttcatgaagaaatgctaatgacctctgttagaatttgttggacttggatataatggttacaagttgtttagtattaattgcaagttagttaagatt |
300 |
Q |
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| T |
47468590 |
ctctttcatgaagaaatgctaatgacctctgttagaatttgttggacttggatataatggttacaagttgtttagtattaattgcaagttagttaagatt |
47468689 |
T |
|
| Q |
301 |
tgttagcttagttaggaggatcattaattaaagtcaacca |
340 |
Q |
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| T |
47468690 |
tgttagcttagttaggaggatcattaattaaagtcaacca |
47468729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 334 - 442
Target Start/End: Original strand, 47469195 - 47469303
Alignment:
| Q |
334 |
tcaaccagttaggtacctgcaaaggggaatgatatctggctcaatttcacgagtccaaagagaccattccatttgaacagcagtaatgggatgaacagca |
433 |
Q |
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| T |
47469195 |
tcaatcagttaggtacctgcaaaggggaatgatatctggctcaatttcacgagtccaaagagaccattccatttgaacagcagtaatgggatgaacagca |
47469294 |
T |
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| Q |
434 |
tgtgccctt |
442 |
Q |
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||||||||| |
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| T |
47469295 |
tgtgccctt |
47469303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 373 - 435
Target Start/End: Original strand, 47473566 - 47473628
Alignment:
| Q |
373 |
ctcaatttcacgagtccaaagagaccattccatttgaacagcagtaatgggatgaacagcatg |
435 |
Q |
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| T |
47473566 |
ctcaatgtcgcgagtccaaagagaccactctatttgtacagcagtgatgggatgaacagcatg |
47473628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 373 - 428
Target Start/End: Original strand, 47486281 - 47486336
Alignment:
| Q |
373 |
ctcaatttcacgagtccaaagagaccattccatttgaacagcagtaatgggatgaa |
428 |
Q |
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| T |
47486281 |
ctcaatgtcacgagtccaaagagaccactccatttgtacagctgtgatgggatgaa |
47486336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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