View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8091_low_19 (Length: 436)
Name: NF8091_low_19
Description: NF8091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8091_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 337; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 363
Target Start/End: Original strand, 7608991 - 7609355
Alignment:
| Q |
1 |
atagctactcctattatacagccttatgcaatatactcctcctagattcttacaatgcagccaaattcaatgttttaaaacctgaaccggacattgatct |
100 |
Q |
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| T |
7608991 |
atagctactcctattatacagccttatgcaatatactcctcctagattcttacaatgcagccaaattcaatgttttaaaacctgaaccggacattgatct |
7609090 |
T |
|
| Q |
101 |
catgggatctccgggtcattgttcagccgttttaaacgactcaaatcatgataaaaccacggttaaattgtttaaataattgaactatagacaatgctgg |
200 |
Q |
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| T |
7609091 |
catgggatctccgggtcattgttcaaccgttttaaacgactcaaatcatgataaaaccacggttaaattgtttaaataattgaactatagacaatgctgg |
7609190 |
T |
|
| Q |
201 |
ttaggattctcaatcagctgaatcgtcgaattcacttcga-ttttaaaaacatttgccaaaacttgttcttttatctattattctttaatgagcgtttga |
299 |
Q |
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| T |
7609191 |
ttaggattctcaatcaactgaatcgtcgaattcacttcgatttttaaaaacatttgccaaaacttgttcttttatctattattctttaatgagcgtttga |
7609290 |
T |
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| Q |
300 |
tttgctaattcaatgattagatatcaaaatttcaggtgtatgatg-ttaatttaaaaactacgtt |
363 |
Q |
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| T |
7609291 |
tttgctaattcaatgattagatatcaaaatttcagttgtatgatgtttaatttaaaaactacgtt |
7609355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 377 - 419
Target Start/End: Original strand, 7609411 - 7609453
Alignment:
| Q |
377 |
ccgtattgcatatttttgttattttgtctctgttatctattct |
419 |
Q |
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| T |
7609411 |
ccgtattgcatatttttgttattttgtctgtgttatctattct |
7609453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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