View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8091_low_2 (Length: 872)
Name: NF8091_low_2
Description: NF8091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8091_low_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 99; Significance: 2e-48; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 717 - 835
Target Start/End: Complemental strand, 36457924 - 36457806
Alignment:
| Q |
717 |
aaataagatgcaaatgagtacatgaggtactcaaccccaatacacaatgttcaacttctataacattctaaatagcataaactccagccgcagaatgtca |
816 |
Q |
| |
|
|||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
36457924 |
aaataagatgcatatgagtacataaggtactcaaccccaatacacaatgttcaacttttataacattctaaatagcataaactccagccagagaatgtca |
36457825 |
T |
|
| Q |
817 |
ttttcggtctgctacctat |
835 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
36457824 |
ttttcggtctgctacctat |
36457806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 647 - 716
Target Start/End: Complemental strand, 36458132 - 36458064
Alignment:
| Q |
647 |
attatccaaccaatggcatactcctcctaggtgatagaaataatttatagcaagctctaattcaaaataa |
716 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| || |||||| ||| ||||||||| || |||||| |
|
|
| T |
36458132 |
attatccaaccaatggcatgctcctcctaggtgatacaagtaatttgtag-aagctctaagtcgaaataa |
36458064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University