View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8091_low_23 (Length: 403)
Name: NF8091_low_23
Description: NF8091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8091_low_23 |
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| [»] scaffold0076 (1 HSPs) |
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Alignment Details
Target: scaffold0076 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: scaffold0076
Description:
Target: scaffold0076; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 20 - 394
Target Start/End: Complemental strand, 47683 - 47309
Alignment:
| Q |
20 |
catacgtctaggccgcctatattcctcggcggtggtgttggcgaagttcggaatattgccttagcttcttctgcatatgtgtgcatgttgtctatgtaag |
119 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
47683 |
catacgtctaggccgcctatattcctcggcggcggtgttggcgaagttcggaatattgccttagcttcttctgcatatgtgtgcatgctgtctatgtaag |
47584 |
T |
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| Q |
120 |
ttgttagttatcatccatattaccaaaaaatattatccatagtatgtggacacccaaaaattgttcattaacccaccgaaactttattcattcaatgata |
219 |
Q |
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|||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47583 |
ttgttagttatcatccatattatcaaaaaatattatctatagtatgtggacacccaaaaattgttcattaacccaccgaaactttattcattcaatgata |
47484 |
T |
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| Q |
220 |
attggaaaagagcatgaaatccaacccaaaaagaaaaacacttagattttaaccacaaaatcagatcgaattaggccataattgtaatggtaaaatgatt |
319 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47483 |
attggaaaagagcatgaaatccaaccaaaaaagaaaaacacttagattttaaccacaaaatcagatcgaattaggccataattgtaatggtaaaatgatt |
47384 |
T |
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| Q |
320 |
tcaataattctattccactagaatatgatgggttaatgtttcaaaggctgacacttacacctatcaaagtattat |
394 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47383 |
tcaataattctattccactagaatatcatgggttaatgtttcaaaggctgacacttacacctatcaaagtattat |
47309 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 137; Significance: 2e-71; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 20 - 190
Target Start/End: Complemental strand, 12325502 - 12325335
Alignment:
| Q |
20 |
catacgtctaggccgcctatattcctcggcggtggtgttggcgaagttcggaatattgccttagcttcttctgcatatgtgtgcatgttgtctatgtaag |
119 |
Q |
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||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |
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| T |
12325502 |
catacgtctaggctgcctatcttcctcggcggtg---ttggcgaagttcggaatattgccttagctgcttctgcatatgtgtgcatgctgtctatgtaag |
12325406 |
T |
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| Q |
120 |
ttgttagttatcatccatattaccaaaaaatattatccatagtatgtggacacccaaaaattgttcattaa |
190 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
12325405 |
ttgttagttatcatccatattaccaaaaaatattatctatagtatgtggacacccaaaaattgttcattaa |
12325335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 20 - 106
Target Start/End: Original strand, 20134183 - 20134269
Alignment:
| Q |
20 |
catacgtctaggccgcctatattcctcggcggtggtgttggcgaagttcggaatattgccttagcttcttctgcatatgtgtgcatg |
106 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |
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| T |
20134183 |
catacgtctaggccgcctatattcctcggcggcggtgttggcgaagttcggaatattgccttggcttcttccgcatatgtgtgcatg |
20134269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 20 - 106
Target Start/End: Complemental strand, 44357888 - 44357802
Alignment:
| Q |
20 |
catacgtctaggccgcctatattcctcggcggtggtgttggcgaagttcggaatattgccttagcttcttctgcatatgtgtgcatg |
106 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |
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| T |
44357888 |
catacgtctaggccgcctatattcctcggcggcggtgttggcgaagttcggaatattgccttggcttcttccgcatatgtgtgcatg |
44357802 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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