View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8091_low_25 (Length: 389)
Name: NF8091_low_25
Description: NF8091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8091_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 24 - 381
Target Start/End: Complemental strand, 33620840 - 33620480
Alignment:
| Q |
24 |
tttgatattaatgactgaacgacaaaactattatttaatttgcataactcta---atttaatgaaaaatttaaattgtgacgatcgcatttttgaattga |
120 |
Q |
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| T |
33620840 |
tttgatattaatgacttaacgacaaaactattatttaatttgcataactctactaatttaatgaaaaatttaaattgtgacgatcgcgtttttgaattga |
33620741 |
T |
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| Q |
121 |
gttacctggattaaatatggttgtggtgttagcaatgtcactatcagaaacaatagaagatgaagaagaagatcgtgacatgttatgattatgatattgt |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33620740 |
gttacctggattaaatatggttgtggtgttagcaatgtcactatcagaaacaatagaagatgaagaagaagatcgtgacatgttatgattatgatattgt |
33620641 |
T |
|
| Q |
221 |
ttattaacagcatgatacaactccaaagctgggaaagtatctgatagcttcgggtcaatttccggtgaatcaaacccaaacccaagttcaaaacaagcat |
320 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33620640 |
ttattaacaacatgatacaactccaaagctgggaaagtatctgatagcttcgggtcaatttccggtgaatcaaacccaaacccaagttcaaaacaagcat |
33620541 |
T |
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| Q |
321 |
tgagttcctgcaagtcatactccgagagactcttgcttaggcgaaggtgaccgtctctgct |
381 |
Q |
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|||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
33620540 |
tgagttcctgcaggtcatactccgatagactcttgcttaggcgaaggtgaccgtctctgct |
33620480 |
T |
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