View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8091_low_26 (Length: 376)
Name: NF8091_low_26
Description: NF8091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8091_low_26 |
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Alignment Details
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 359
Target Start/End: Complemental strand, 2483565 - 2483228
Alignment:
| Q |
1 |
agatccaataataccaaataagaagtcttataataatacaatgcaatgaaaatgtttatatactaaaagcacaaaagactaaaccacttacaatataata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
2483565 |
agatccaataataccaaataagaagtcttataataatacaatgcaatgaaaatgtttatatactaaaagcac------------------caatataata |
2483484 |
T |
|
| Q |
101 |
tactactatctaacagaaatttcatgttaatttttcccagtgatttgcacaaaatatatttttcttcattgattggttatttatactctgaaacttttat |
200 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |
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| T |
2483483 |
tacta---tctaacagaaatttcatgttaatttttcccagtgatttgcacaaaatatatttttcttcattgattggttatttatcatcttgaacttttat |
2483387 |
T |
|
| Q |
201 |
tccaaatggaaaacaaggaaagtgaaagttaacaaataaatgcttaacaaagcaaaaacatatccttcattgatttgccttttaagcctaattttccttg |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
2483386 |
tccaaatggaaaacaaggaaagtgaaagttaacaaataaatgcttaacaaagcaaaaacatatccttatgtgatttgccttttaagcctaattttccttg |
2483287 |
T |
|
| Q |
301 |
agtgtagtcccatctgagttgagatcatgaccctgtccttgcctttggcaccttgaatt |
359 |
Q |
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| T |
2483286 |
aatgtagtcccatctgagttcagattatgaacctgtccttagctttggcaacttgaatt |
2483228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 271 - 359
Target Start/End: Complemental strand, 10295112 - 10295021
Alignment:
| Q |
271 |
tgatttgccttttaagcctaattttccttgagtgtagtcccatctgagttgag---atcatgaccctgtccttgcctttggcaccttgaatt |
359 |
Q |
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| T |
10295112 |
tgatttgctttataagccaaattttctttgagtgtagtcccatctgagttgaggttatgatgatcctgaccttggctttgccaacttgaatt |
10295021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 271 - 332
Target Start/End: Original strand, 2574983 - 2575044
Alignment:
| Q |
271 |
tgatttgccttttaagcctaattttccttgagtgtagtcccatctgagttgagatcatgacc |
332 |
Q |
| |
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|||||| |||| |||||| |||||||| |||||||| |||||||||||||||| | |||||| |
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| T |
2574983 |
tgattttccttataagccaaattttccatgagtgtattcccatctgagttgaggttatgacc |
2575044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 320
Target Start/End: Complemental strand, 2581889 - 2581840
Alignment:
| Q |
271 |
tgatttgccttttaagcctaattttccttgagtgtagtcccatctgagtt |
320 |
Q |
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| T |
2581889 |
tgatttgctttataagccaaattttctttgattgtagtcccatctgagtt |
2581840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 228
Target Start/End: Complemental strand, 10295248 - 10295159
Alignment:
| Q |
139 |
agtgatttgcacaaaatatatttttcttcattgattggttatttatactctgaaacttttattccaaatggaaaacaaggaaagtgaaag |
228 |
Q |
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|||||||||||||||| ||||||| | | | |||||||||||||| | ||| || || ||||| |||||||||| ||| ||| |||||| |
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| T |
10295248 |
agtgatttgcacaaaaaatattttcccttagtgattggttatttagaaactgcaaattgtattctaaatggaaaataagaaaaatgaaag |
10295159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 271 - 359
Target Start/End: Complemental strand, 22203906 - 22203818
Alignment:
| Q |
271 |
tgatttgccttttaagcctaattttccttgagtgtagtcccatctgagttgagatcatgaccctgtccttgcctttggcaccttgaatt |
359 |
Q |
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|||||| |||| |||||| |||||||| ||||||||||||||||||||||||| | |||||| |||||||| ||||| || |||||||| |
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| T |
22203906 |
tgattttccttataagccaaattttccatgagtgtagtcccatctgagttgaggttatgaccatgtccttggctttgccaacttgaatt |
22203818 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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