View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8091_low_33 (Length: 291)
Name: NF8091_low_33
Description: NF8091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8091_low_33 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 248; Significance: 1e-138; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 13 - 291
Target Start/End: Complemental strand, 5172773 - 5172490
Alignment:
| Q |
13 |
tggacatcagttattggtttgtcaaatttataaattttggaaggtgacatcattgcctgaatgcatgcattcataatctccttccatcaatgtataatcc |
112 |
Q |
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| T |
5172773 |
tggacatgagttattggtttgtcaaatttataaattttggaagttgacatcattgcctgaatgcatgcattcataatctccttccatcaatgtataatcc |
5172674 |
T |
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| Q |
113 |
aatattacaagattgtccacaacttgagttgttctgt-----gatggaggttttccatcaagcttaaaagtgttgtatctttgtaattgttccaaacatt |
207 |
Q |
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| T |
5172673 |
aatattacaagattgtccacaacttgagttgttctgttctgtgatggaggttttccatcaagcttaaaagtgttgtatcttagtaattgttccaaacatt |
5172574 |
T |
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| Q |
208 |
tagtgtaaaagttttggcatacattcgaacaaaagtaaagtgcaaaagttcttccatttggttgttggataaattcattttctt |
291 |
Q |
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| T |
5172573 |
tagtgtaaaagttttggcatacattcgaacaaaagtaaagtgcaaaagttcttctatttggttgttggataaattcattttctt |
5172490 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 61 - 204
Target Start/End: Original strand, 14298655 - 14298794
Alignment:
| Q |
61 |
atcattgcctgaatgcatgcattcataatctccttccatcaatgtataatccaatattacaagattgtccacaacttgagttgttctgtgatggaggttt |
160 |
Q |
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| T |
14298655 |
atcattgcctgaatgcatgca--cat--tctccttccatcgatgtatcatctaatagtacaggactgtctgcaactagagttgttctctgatggaggttt |
14298750 |
T |
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| Q |
161 |
tccatcaagcttaaaagtgttgtatctttgtaattgttccaaac |
204 |
Q |
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| T |
14298751 |
gccttcaaacttaaaacagttgcatcttcgcaattgttccaaac |
14298794 |
T |
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