View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8091_low_35 (Length: 283)
Name: NF8091_low_35
Description: NF8091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8091_low_35 |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 10561529 - 10561780
Alignment:
| Q |
1 |
acccctataattgcatgtgcactcaccaatttggacacagcttttacatttgttcttgcaattctcttcagacaagagaatttgggaataaagaagaaga |
100 |
Q |
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| T |
10561529 |
accccgataatcgcatgtgcgctcaccaatttggacacagcttttacctttgttcttgcaattctcttcagacaagagaatttgggaataaagaagaaga |
10561628 |
T |
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| Q |
101 |
gtggtgtagcaaaggtggtagggacagttctatgtattggtggagcggtagttttatcattttatcacgcaaaagtaattgatgtacctgaatcaagggt |
200 |
Q |
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| T |
10561629 |
gtggcgtagcaaaggtggtagggacagttctatgtattggtggagcggtagttttatcattttatcacgcaaaagtaattgatgtacctgaatcaagggt |
10561728 |
T |
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| Q |
201 |
tcattggaattatgcagagaaacttgaacatggtcatcttaacttctctgct |
252 |
Q |
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| T |
10561729 |
tcattggagttatgcagagaaacttgaacatggtcatcttaacttctctgct |
10561780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 70 - 220
Target Start/End: Original strand, 45936245 - 45936395
Alignment:
| Q |
70 |
agacaagagaatttgggaataaagaagaagagtggtgtagcaaaggtggtagggacagttctatgtattggtggagcggtagttttatcattttatcacg |
169 |
Q |
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||||||||||||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||| ||||||||||| || || |||||||||| || | |
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| T |
45936245 |
agacaagagaatttgggaataaagaagaaaagtggtatagcaaaagtggtagggacagttctatgtgttggtggagcgatacttctatcattttaccatg |
45936344 |
T |
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| Q |
170 |
caaaagtaattgatgtacctgaatcaagggttcattggaattatgcagaga |
220 |
Q |
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| T |
45936345 |
gacaagtaattggtataccagaatcaaaaattcattggagttatgctgaga |
45936395 |
T |
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