View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8091_low_39 (Length: 253)
Name: NF8091_low_39
Description: NF8091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8091_low_39 |
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Alignment Details
Target: chr3 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 9 - 237
Target Start/End: Complemental strand, 25296421 - 25296199
Alignment:
| Q |
9 |
cattattctataattttgatcctctatgctcaatgaacaaagagtaaactaataacatactagaacaaaatacaaagcatcagcaaagaaacttctaact |
108 |
Q |
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| T |
25296421 |
cattcttctataattttgatactctatgctcaatgaacaaagagtaaactaataa-----tagaac-aaatacaaagcatcaacaaagaaacttctaact |
25296328 |
T |
|
| Q |
109 |
aatcacaacagtggttctcttctcgtagcatgcttcatggattgtagaatttccctccgcaaaagcacctccaggcttgagggaaattcccggctgaaat |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |
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| T |
25296327 |
gatcacaacagtggttctcttctcgtagcatgcttcatggattgtagaatttccctccgcaaaagcacctccaggcttgagggaaatacccgactgaaat |
25296228 |
T |
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| Q |
209 |
tccaacattccccaccattgctatgcatg |
237 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
25296227 |
tccaacattccccaccattgctatgcatg |
25296199 |
T |
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