View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8091_low_4 (Length: 746)
Name: NF8091_low_4
Description: NF8091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8091_low_4 |
 | |
|
| [»] scaffold0164 (1 HSPs) |
| | |
|
| [»] scaffold0039 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 537; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 537; E-Value: 0
Query Start/End: Original strand, 1 - 728
Target Start/End: Original strand, 45621271 - 45621995
Alignment:
| Q |
1 |
atacacatgaatatcattcagtccttgttgtttgataagcatgaagcttctccagtggatcatggagaagaaaatttaagggggtgccagttggaggtgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45621271 |
atacacatgaatatcattcagtccttgttgtttgataagcatgaagcttctccagtggatcatggagaagaaaatttaagggggtgccagttggaggtgt |
45621370 |
T |
|
| Q |
101 |
taaccaacacagatgactaactagtagtaatagtaaatgggtaatcgagataaaatgcagttaatctatacctattaataaagacaatactattttttgg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| || |||||||||||| |
|
|
| T |
45621371 |
taaccaacacagatgactaactagtagtaatagtaacagggtaatcgagataaaacgcagttaatctatacctattaataaaggcagtactattttttga |
45621470 |
T |
|
| Q |
201 |
tgtagccnnnnnnngtacatcccaaaatgcctttacttgatggcagttattnnnnnnnnnnnnntctgttttacccactaatcacacaccaaaacataac |
300 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||||||||| |
|
|
| T |
45621471 |
tgtagcctttttttgtacatcccaaaatgcctttacttgatggcaattattaaaaaaaaata--tatgttttacccactaatcacacaccaaaacataac |
45621568 |
T |
|
| Q |
301 |
tactgtgtttttctttgnnnnnnntctggcttaaccactaatcacactcacaaaaacataattgctacctttctctttctcacagtagcagaaacaatca |
400 |
Q |
| |
|
||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |
|
|
| T |
45621569 |
taccgtgtttttctttgaaaaaaatctgacttaaccactaatcacactcacaaaaacataattgctacctt-ctctttctcacagttgcagaaacaatca |
45621667 |
T |
|
| Q |
401 |
tnnnnnnncaattgcttccattctatttctcacaattgaatggtttagttctacacaatttatcaaacaattattcagagaaaggcccttcaatgacact |
500 |
Q |
| |
|
| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| | |
|
|
| T |
45621668 |
taaaaaaacaactgcttccattctatttctcacaattgaatggtttagttctacacaatttattaaacaattattcagagaaaggcccctcaatgacatt |
45621767 |
T |
|
| Q |
501 |
gtttgcttctaacttctccatcactttttggtacgtcatgtttaaattttgcaatggaatacttgatcctttcttatgatcttgttgctaactcaaatgg |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
45621768 |
gtttgcttctaacttctccatcactttttggtacgtcatgtttaaattttgcaatggaatacttgatcatttattatgatcttgttgctaactcaaatgg |
45621867 |
T |
|
| Q |
601 |
acatctcttatattgctaattacagtaatttataagcacatacttaatattactctcctgtcatgaagaaacaacccaccaatagcggtttcctgaatgt |
700 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45621868 |
acatctcttatattgctaattacagtaatttataagcacatacttaatattgctctcatgtcatgaagaaacaacccaccaatagcggtttcctgaatgt |
45621967 |
T |
|
| Q |
701 |
tccatggtgcatgcatttttcttttgat |
728 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
45621968 |
tccatggtgcatgcatttttcttttgat |
45621995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 207
Target Start/End: Original strand, 45623318 - 45623364
Alignment:
| Q |
161 |
ttaatctatacctattaataaagacaatactattttttggtgtagcc |
207 |
Q |
| |
|
||||||||||||||||||||||| ||||||| | ||||||||||||| |
|
|
| T |
45623318 |
ttaatctatacctattaataaaggcaatactttcttttggtgtagcc |
45623364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 372; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 215 - 728
Target Start/End: Original strand, 22603007 - 22603516
Alignment:
| Q |
215 |
gtacatcccaaaatgcctttacttgatggcagttattnnnnnnnnnnnnntctgttttacccactaatcacacaccaaaacataactactgtgtttttct |
314 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
22603007 |
gtacatcccaaaatgcccttacttgatggcagttattaaaaaaaaa----tctgctttacccactaatcacacaccaaagcataactactgtgtttttct |
22603102 |
T |
|
| Q |
315 |
ttgnnnnnnntctggcttaaccactaatcacactcacaaaaacataattgctacctttctctttctcacagtagcagaaacaatcatnnnnnnncaattg |
414 |
Q |
| |
|
||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| ||| || |
|
|
| T |
22603103 |
ttgaaaaaaatctggcttacctactaatcacactcacaaaaacataattgctacctttctctttctcacagttgcataaacaatcataaaaaaacaactg |
22603202 |
T |
|
| Q |
415 |
cttccattctatttctcacaattgaatggtttagttctacacaatttatcaaacaattattcagagaaaggcccttcaatgacactgtttgcttctaact |
514 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
22603203 |
cttccattctatttctcacaattgaatggtttagttctacacaatttattaaacaattattcagagaaaggcccctcaatgacaccgtttgcttctaact |
22603302 |
T |
|
| Q |
515 |
tctccatcactttttggtacgtcatgtttaaattttgcaatggaatacttgatcctttcttatgatcttgttgctaactcaaatggacatctcttatatt |
614 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22603303 |
tctccatcactttttggtacgtcatgtttaaattttgcaatggaatacttgatcctttcttatgatcttgttgctaactcaaatggacatctcttatatt |
22603402 |
T |
|
| Q |
615 |
gctaattacagtaatttataagcacatacttaatattactctcctgtcatgaagaaacaacccaccaatagcggtttcctgaatgttccatggtgcatgc |
714 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
22603403 |
gctaattacagaaatttataagcacatacttaatattgctctcctgtcatgaagaaacaacccaccaatagcggtttcctgagtgttccatggtgcatgc |
22603502 |
T |
|
| Q |
715 |
atttttcttttgat |
728 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
22603503 |
atttttcttttgat |
22603516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 161 - 242
Target Start/End: Original strand, 29781131 - 29781212
Alignment:
| Q |
161 |
ttaatctatacctattaataaagacaatactattttttggtgtagccnnnnnnngtacatcccaaaatgcctttacttgatg |
242 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||| |||||||||| |
|
|
| T |
29781131 |
ttaatctatacctattaataaaggcaatactattttttggtgtagcctttttttgtaaatcccaaaatgcccttacttgatg |
29781212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 162 - 205
Target Start/End: Complemental strand, 510339 - 510296
Alignment:
| Q |
162 |
taatctatacctattaataaagacaatactattttttggtgtag |
205 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
510339 |
taatctatacctattaataaaggcaatactattttttggtgtag |
510296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 205
Target Start/End: Complemental strand, 23124908 - 23124864
Alignment:
| Q |
161 |
ttaatctatacctattaataaagacaatactattttttggtgtag |
205 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
23124908 |
ttaatctatacctattaataaaggcaatattattttttggtgtag |
23124864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 207
Target Start/End: Complemental strand, 29642497 - 29642451
Alignment:
| Q |
161 |
ttaatctatacctattaataaagacaatactattttttggtgtagcc |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
29642497 |
ttaatctatacctattaataaagacaatacatgtttttggtgtagcc |
29642451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 348; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 164 - 728
Target Start/End: Complemental strand, 15214940 - 15214382
Alignment:
| Q |
164 |
atctatacctattaataaagacaatactattttttggtgtagccnnnnnnngtacatcccaaaatgcctttacttgatggcagttattnnnnnnnnnnnn |
263 |
Q |
| |
|
|||| ||||||||||||||| |||||| ||||||||||||| || ||| ||||||||||||| ||||||||||||||||||| |
|
|
| T |
15214940 |
atctttacctattaataaaggcaatacaattttttggtgtaacctttttttgtaaatcccaaaatgcccttacttgatggcagttattaaaaaaaaaa-- |
15214843 |
T |
|
| Q |
264 |
ntctgttttacccactaatcacacaccaaaacataactactgtgtttttctttgnnnnnnntctggcttaaccactaatcacactcacaaaaacataatt |
363 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| |||| |||||||||| ||||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
15214842 |
-tctgctttacccactaatcacacaccaaaacataactgctgtatttttctttgaaaaaaatctggcttacccactaatcacactcacaaatacataatt |
15214744 |
T |
|
| Q |
364 |
gctacctttctctttctcacagtagcagaaacaatcatnnnnnnncaattgcttccattctatttctcacaattgaatggtttagttctacacaatttat |
463 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
15214743 |
gctacctttctctttctcacagttgcagaaacaatcataaaaaaacaactgcttccattctatttttcacaattgaatggtttagttctacacaatttat |
15214644 |
T |
|
| Q |
464 |
caaacaattattcagagaaaggcccttcaatgacactgtttgcttctaacttctccatcactttttggtacgtcatgtttaaattttgcaatggaatact |
563 |
Q |
| |
|
|||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
15214643 |
taaacaattgttcagagaaaggcccctcaatgacactgtttgcttctaacttctccatcactttttggtatgtcatgtttaaatt---caatggaatact |
15214547 |
T |
|
| Q |
564 |
tgatcctttcttatgatcttgttgctaactcaaatggacatctcttatattgctaattacagtaatttataagcacatacttaatattactctcctgtca |
663 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
15214546 |
tgatcctttcttatgatcatgttgctaactcaaatggacatctcttatattgctaattacagtaatttataagcacatatttaatattgttctcctgtca |
15214447 |
T |
|
| Q |
664 |
tgaagaaacaacccaccaatagcggtttcctgaatgttccatggtgcatgcatttttcttttgat |
728 |
Q |
| |
|
|||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15214446 |
tgaagaaataacccaccaatagcgatttcctgaatgttccatggtgcatgcatttttcttttgat |
15214382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 164 - 728
Target Start/End: Complemental strand, 15254159 - 15253601
Alignment:
| Q |
164 |
atctatacctattaataaagacaatactattttttggtgtagccnnnnnnngtacatcccaaaatgcctttacttgatggcagttattnnnnnnnnnnnn |
263 |
Q |
| |
|
|||| ||||||||||||||| |||||| ||||||||||||| || ||| ||||||||||||| ||||||||||||||||||| |
|
|
| T |
15254159 |
atctttacctattaataaaggcaatacaattttttggtgtaacctttttttgtaaatcccaaaatgcccttacttgatggcagttattaaaaaaaaaa-- |
15254062 |
T |
|
| Q |
264 |
ntctgttttacccactaatcacacaccaaaacataactactgtgtttttctttgnnnnnnntctggcttaaccactaatcacactcacaaaaacataatt |
363 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| |||| |||||||||| ||||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
15254061 |
-tctgctttacccactaatcacacaccaaaacataactgctgtatttttctttgaaaaaaatctggcttacccactaatcacactcacaaatacataatt |
15253963 |
T |
|
| Q |
364 |
gctacctttctctttctcacagtagcagaaacaatcatnnnnnnncaattgcttccattctatttctcacaattgaatggtttagttctacacaatttat |
463 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
15253962 |
gctacctttctctttctcacagttgcagaaacaatcataaaaaaacaactgcttccattctatttttcacaattgaatggtttagttctacacaatttat |
15253863 |
T |
|
| Q |
464 |
caaacaattattcagagaaaggcccttcaatgacactgtttgcttctaacttctccatcactttttggtacgtcatgtttaaattttgcaatggaatact |
563 |
Q |
| |
|
|||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
15253862 |
taaacaattgttcagagaaaggcccctcaatgacactgtttgcttctaacttctccatcactttttggtatgtcatgtttaaatt---caatggaatact |
15253766 |
T |
|
| Q |
564 |
tgatcctttcttatgatcttgttgctaactcaaatggacatctcttatattgctaattacagtaatttataagcacatacttaatattactctcctgtca |
663 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
15253765 |
tgatcctttcttatgatcatgttgctaactcaaatggacatctcttatattgctaattacagtaatttataagcacatatttaatattgttctcctgtca |
15253666 |
T |
|
| Q |
664 |
tgaagaaacaacccaccaatagcggtttcctgaatgttccatggtgcatgcatttttcttttgat |
728 |
Q |
| |
|
|||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15253665 |
tgaagaaataacccaccaatagcgatttcctgaatgttccatggtgcatgcatttttcttttgat |
15253601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 335 - 472
Target Start/End: Original strand, 7043544 - 7043681
Alignment:
| Q |
335 |
ccactaatcacactcacaaaaacataattgctacctttctctttctcacagtagcagaaacaatcatnnnnnnncaattgcttccattctatttctcaca |
434 |
Q |
| |
|
||||||||||||||||||||| ||||| || | ||||||||||||||| | | ||||||||||| || |||||||||||||||||||||||||| |
|
|
| T |
7043544 |
ccactaatcacactcacaaaatcataactgttgcctttctctttctcaaaattgcagaaacaattataagaaaacaattgcttccattctatttctcaca |
7043643 |
T |
|
| Q |
435 |
attgaatggtttagttctacacaatttatcaaacaatt |
472 |
Q |
| |
|
|||| |||||||| ||||||||||||||| |||||||| |
|
|
| T |
7043644 |
attgcatggtttacttctacacaatttattaaacaatt |
7043681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 164 - 251
Target Start/End: Original strand, 7043334 - 7043421
Alignment:
| Q |
164 |
atctatacctattaataaagacaatactattttttggtgtagccnnnnnnngtacatcccaaaatgcctttacttgatggcagttatt |
251 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| ||||||| | ||| ||||||||||| | |||||| |||| ||||||| |
|
|
| T |
7043334 |
atctatacctattaataaaggcaatactatttttgggtgtagtctttttttgtaaatcccaaaatgtccttacttcatggtagttatt |
7043421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 207
Target Start/End: Original strand, 23217929 - 23217974
Alignment:
| Q |
163 |
aatctatacctattaataaagacaatac-tattttttggtgtagcc |
207 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||||||||||||||| |
|
|
| T |
23217929 |
aatctatacctattaataaagacaatactttttttttggtgtagcc |
23217974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 207
Target Start/End: Original strand, 18983758 - 18983805
Alignment:
| Q |
161 |
ttaatctatacctattaataaagacaatactatt-ttttggtgtagcc |
207 |
Q |
| |
|
||||||||||||||||||||||| ||||||| || ||||||||||||| |
|
|
| T |
18983758 |
ttaatctatacctattaataaaggcaatacttttcttttggtgtagcc |
18983805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 341; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 265 - 728
Target Start/End: Original strand, 20187858 - 20188323
Alignment:
| Q |
265 |
tctgttttacccactaatcacacaccaaaacataactactgtgtttttctttgnnnnnnntctggcttaaccactaatcacactcacaaaaacataattg |
364 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| || ||||||||||||||||||||||||||| |
|
|
| T |
20187858 |
tctgctttacccactaatcacacaccaaaacataactgctgtgtttttctttgaaaaaaatctggcttaccccctaatcacactcacaaaaacataattg |
20187957 |
T |
|
| Q |
365 |
ctacctttctctttctcacagtagcagaaacaatcatnnnnnnn--caattgcttccattctatttctcacaattgaatggtttagttctacacaattta |
462 |
Q |
| |
|
|||| ||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
20187958 |
ctacgtttctctttctcatagttgcagaaacaatcatataaaaaaacaattgcttccattctatttctcacaattaaatggtttagttctacacaattta |
20188057 |
T |
|
| Q |
463 |
tcaaacaattattcagagaaaggcccttcaatgacactgtttgcttctaacttctccatcactttttggtacgtcatgtttaaattttgcaatggaatac |
562 |
Q |
| |
|
| |||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20188058 |
ttaaacaattgttcagagaagggcccctcaatgacactgtttgcttctaacttctccatcactttttggtacgtcatgtttaaattttgcaatggaatac |
20188157 |
T |
|
| Q |
563 |
ttgatcctttcttatgatcttgttgctaactcaaatggacatctcttatattgctaattacagtaatttataagcacatacttaatattactctcctgtc |
662 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||| || |
|
|
| T |
20188158 |
ttgatcctttcttatgatcctgttgctaactcaaatggacatctcttatattgctaattacagtaatttataagcacgtatttaatattgctctcctatc |
20188257 |
T |
|
| Q |
663 |
atgaagaaacaacccaccaatagcggtttcctgaatgttccatggtgcatgcatttttcttttgat |
728 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20188258 |
atgaagaaacaccccaccaatagcggtttcctgaatgttccatggtgcatgcatttttcttttgat |
20188323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 335 - 472
Target Start/End: Original strand, 25613428 - 25613565
Alignment:
| Q |
335 |
ccactaatcacactcacaaaaacataattgctacctttctctttctcacagtagcagaaacaatcatnnnnnnncaattgcttccattctatttctcaca |
434 |
Q |
| |
|
|||||||||||||||| ||| ||||| |||| ||||||||||||||| | | ||||||||||| || |||||||||||||||||||||||||| |
|
|
| T |
25613428 |
ccactaatcacactcaagaaatcataactgctgcctttctctttctcaaaattgcagaaacaattataagaaaacaattgcttccattctatttctcaca |
25613527 |
T |
|
| Q |
435 |
attgaatggtttagttctacacaatttatcaaacaatt |
472 |
Q |
| |
|
||| |||||||| ||||||||||||||| |||||||| |
|
|
| T |
25613528 |
atttcatggtttacttctacacaatttattaaacaatt |
25613565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 162 - 242
Target Start/End: Original strand, 46119661 - 46119741
Alignment:
| Q |
162 |
taatctatacctattaataaagacaatactattttttggtgtagccnnnnnnngtacatcccaaaatgcctttacttgatg |
242 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||| | ||| ||||||||||||| |||||||||| |
|
|
| T |
46119661 |
taatctatacctattaataaaggcaatactattttttggtgtaacatttttttgtaaatcccaaaatgcccttacttgatg |
46119741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 206
Target Start/End: Complemental strand, 22048969 - 22048926
Alignment:
| Q |
163 |
aatctatacctattaataaagacaatactattttttggtgtagc |
206 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||||||| |||||| |
|
|
| T |
22048969 |
aatctatacctattaataaaggcaatacttttttttgttgtagc |
22048926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 164 - 251
Target Start/End: Original strand, 20187760 - 20187847
Alignment:
| Q |
164 |
atctatacctattaataaagacaatactattttttggtgtagccnnnnnnngtacatcccaaaatgcctttacttgatggcagttatt |
251 |
Q |
| |
|
|||||||||||||||||||| || ||||||| | |||||||||| ||| ||||| ||||||| ||| |||||||| |||||| |
|
|
| T |
20187760 |
atctatacctattaataaaggcagtactattatgtggtgtagcctttttttgtaaatccccaaatgcccttatttgatggccgttatt |
20187847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 1e-21; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 335 - 472
Target Start/End: Original strand, 17722221 - 17722357
Alignment:
| Q |
335 |
ccactaatcacactcacaaaaacataa--ttgctacctttctctttctcacagtagcagaaacaatcatnnnnnnncaattgcttccattctatttctca |
432 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||| || |||||||||| | | ||||||||||| || |||||||||||||||||||||||| |
|
|
| T |
17722221 |
ccactaatcacactcacaaaatcataacgttgct---ttactctttctcaaaattgcagaaacaattataagaaaacaattgcttccattctatttctca |
17722317 |
T |
|
| Q |
433 |
caattgaatggtttagttctacacaatttatcaaacaatt |
472 |
Q |
| |
|
|||||| |||||||| ||||| ||||||||| |||||||| |
|
|
| T |
17722318 |
caattgcatggtttacttctatacaatttattaaacaatt |
17722357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 162 - 207
Target Start/End: Complemental strand, 21686161 - 21686116
Alignment:
| Q |
162 |
taatctatacctattaataaagacaatactattttttggtgtagcc |
207 |
Q |
| |
|
|||||||||||||||||||||| ||||||| ||||||||||||||| |
|
|
| T |
21686161 |
taatctatacctattaataaaggcaatacttttttttggtgtagcc |
21686116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 164 - 207
Target Start/End: Original strand, 17721533 - 17721576
Alignment:
| Q |
164 |
atctatacctattaataaagacaatactattttttggtgtagcc |
207 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
17721533 |
atctatacctattaataaaggcaatactattttttggtttagcc |
17721576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 164 - 207
Target Start/End: Original strand, 23158117 - 23158160
Alignment:
| Q |
164 |
atctatacctattaataaagacaatactattttttggtgtagcc |
207 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||||||||||| |
|
|
| T |
23158117 |
atctatacctattaataaagacaatacttttgtttggtgtagcc |
23158160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 164 - 206
Target Start/End: Original strand, 19000466 - 19000508
Alignment:
| Q |
164 |
atctatacctattaataaagacaatactattttttggtgtagc |
206 |
Q |
| |
|
|||||||||||||||||||| ||||||||| |||||||||||| |
|
|
| T |
19000466 |
atctatacctattaataaaggcaatactatattttggtgtagc |
19000508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 207
Target Start/End: Original strand, 18763100 - 18763145
Alignment:
| Q |
162 |
taatctatacctattaataaagacaatactattttttggtgtagcc |
207 |
Q |
| |
|
||||||||||||||||||||||||| |||| || |||||||||||| |
|
|
| T |
18763100 |
taatctatacctattaataaagacagtacttttgtttggtgtagcc |
18763145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 162 - 206
Target Start/End: Original strand, 20879072 - 20879116
Alignment:
| Q |
162 |
taatctatacctattaataaagacaatactattttttggtgtagc |
206 |
Q |
| |
|
|||||||||||||||||||||| ||||| | |||||||||||||| |
|
|
| T |
20879072 |
taatctatacctattaataaaggcaatatttttttttggtgtagc |
20879116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 163 - 242
Target Start/End: Complemental strand, 44923925 - 44923846
Alignment:
| Q |
163 |
aatctatacctattaataaagacaatactattttttggtgtagccnnnnnnngtacatcccaaaatgcctttacttgatg |
242 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||| ||| |||||| |
|
|
| T |
44923925 |
aatctatacctattaataaaggcaatactattttttggtgtagcctttttttgtaaatcccaaaatgcccttatttgatg |
44923846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 207
Target Start/End: Complemental strand, 23463793 - 23463750
Alignment:
| Q |
164 |
atctatacctattaataaagacaatactattttttggtgtagcc |
207 |
Q |
| |
|
|||||||||||||||||||| ||||||| | ||||||||||||| |
|
|
| T |
23463793 |
atctatacctattaataaaggcaatactttgttttggtgtagcc |
23463750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 205
Target Start/End: Complemental strand, 25423815 - 25423770
Alignment:
| Q |
161 |
ttaatctatacctattaataaagacaatactatt-ttttggtgtag |
205 |
Q |
| |
|
||||||||||||||||||||||| ||||||| || ||||||||||| |
|
|
| T |
25423815 |
ttaatctatacctattaataaaggcaatacttttcttttggtgtag |
25423770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 164 - 207
Target Start/End: Complemental strand, 35579496 - 35579453
Alignment:
| Q |
164 |
atctatacctattaataaagacaatactattttttggtgtagcc |
207 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
35579496 |
atctatacctattaataaaggcaatactattttttggtgtagcc |
35579453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 207
Target Start/End: Complemental strand, 50380530 - 50380485
Alignment:
| Q |
162 |
taatctatacctattaataaagacaatactattttttggtgtagcc |
207 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
50380530 |
taatctatacctattaataaaggaaatacttttttttggtgtagcc |
50380485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 163 - 207
Target Start/End: Original strand, 581741 - 581785
Alignment:
| Q |
163 |
aatctatacctattaataaagacaatactattttttggtgtagcc |
207 |
Q |
| |
|
||||||||||||||||||||||||||||| | |||||||||||| |
|
|
| T |
581741 |
aatctatacctattaataaagacaatactttaatttggtgtagcc |
581785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000007; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 164 - 207
Target Start/End: Original strand, 19832214 - 19832257
Alignment:
| Q |
164 |
atctatacctattaataaagacaatactattttttggtgtagcc |
207 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||||||||||||| |
|
|
| T |
19832214 |
atctatacctattaataaaggcaatacttttttttggtgtagcc |
19832257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 204
Target Start/End: Complemental strand, 20670658 - 20670616
Alignment:
| Q |
162 |
taatctatacctattaataaagacaatactattttttggtgta |
204 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
20670658 |
taatctatacctattaataaatgcaatactattttttggtgta |
20670616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 207
Target Start/End: Original strand, 22542955 - 22543000
Alignment:
| Q |
162 |
taatctatacctattaataaagacaatactattttttggtgtagcc |
207 |
Q |
| |
|
|||| ||||||||||||||||| ||||||| ||||||| ||||||| |
|
|
| T |
22542955 |
taatatatacctattaataaaggcaatacttttttttgatgtagcc |
22543000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0164 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0164
Description:
Target: scaffold0164; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 165 - 207
Target Start/End: Original strand, 34289 - 34331
Alignment:
| Q |
165 |
tctatacctattaataaagacaatactattttttggtgtagcc |
207 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
34289 |
tctatacctattaataaagggaatactattttttggtgtagcc |
34331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 162 - 207
Target Start/End: Original strand, 79969 - 80015
Alignment:
| Q |
162 |
taatctatacctattaataaagacaatactatt-ttttggtgtagcc |
207 |
Q |
| |
|
|||||||||||||||||||||| ||||||| || ||||||||||||| |
|
|
| T |
79969 |
taatctatacctattaataaaggcaatacttttgttttggtgtagcc |
80015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University