View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8091_low_40 (Length: 251)

Name: NF8091_low_40
Description: NF8091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8091_low_40
NF8091_low_40
[»] chr5 (1 HSPs)
chr5 (1-239)||(22713211-22713449)
[»] chr7 (4 HSPs)
chr7 (62-237)||(32482584-32482761)
chr7 (31-193)||(21663092-21663254)
chr7 (33-219)||(45870801-45870987)
chr7 (35-119)||(25708198-25708282)
[»] chr3 (1 HSPs)
chr3 (143-237)||(42075041-42075135)
[»] chr8 (1 HSPs)
chr8 (33-210)||(39903566-39903743)
[»] chr4 (2 HSPs)
chr4 (71-209)||(22627085-22627223)
chr4 (50-106)||(10393007-10393063)
[»] chr2 (3 HSPs)
chr2 (35-100)||(36239046-36239111)
chr2 (50-106)||(43689596-43689652)
chr2 (64-193)||(2074946-2075075)


Alignment Details
Target: chr5 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 22713449 - 22713211
Alignment:
Q  1 tctccaattcacttattttgcaggagtaggagcaactagacgttccttcatgcaacttttgtggcttttatgtgtgtgggtgttatggactgaatgtaat 100  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||| |||||    
T  22713449 tctccaattcacttatttggcaggagtaggagcaactagacgttccttcatgcaattgttgtggctcttatgtgtgtgggtgttatggactgaacgtaat 22713350  T
Q  101 aataggcactttaataacatcgtaatgaatactcatcagttgttcgaaaaggttcaaattaattcttactggtggttgaaagcagcaaatgcagttcatg 200  Q
    ||||| || ||||||||||||| |||||||| |||||||||||||||||||||||||||| ||||||| | |||||||||||||||||||| | ||||||    
T  22713349 aatagacagtttaataacatcgaaatgaatattcatcagttgttcgaaaaggttcaaattcattcttattagtggttgaaagcagcaaatggaattcatg 22713250  T
Q  201 tgttgggggtgcataattgcctagcctgttctattctct 239  Q
    |||||| |||||||||||| |||| |||| |||||||||    
T  22713249 tgttggtggtgcataattggctagtctgtcctattctct 22713211  T

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Target: chr7 (Bit Score: 139; Significance: 8e-73; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 62 - 237
Target Start/End: Original strand, 32482584 - 32482761
Alignment:
Q  62 tggcttttatgtgtgtgggtgttatggactgaatgtaataataggcactttaataacatcgtaatgaatactcatcagttgttcgaaaaggttcaaatta 161  Q
    ||||| ||||||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  32482584 tggctcttatgtgtgtgggtgttatggactgaacgtaataataggcagtttaataacaccgtaatgaatactcatcagttgttcaaaaaggttcaaatta 32482683  T
Q  162 attcttactggtggttgaaagcagcaaatgcagttca--tgtgttgggggtgcataattgcctagcctgttctattct 237  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||| ||||||||| |||||||    
T  32482684 attcttactggtggttgaaagcagcaaatgcagttcatgtgtgttgggggtgcataattggctagcctgtcctattct 32482761  T

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Target: chr7; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 31 - 193
Target Start/End: Original strand, 21663092 - 21663254
Alignment:
Q  31 agcaactagacgttccttcatgcaacttttgtggcttttatgtgtgtgggtgttatggactgaatgtaataataggcactttaataacatcgtaatgaat 130  Q
    |||| ||||||| || || ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| || |||||||||| |  |||   |    
T  21663092 agcatctagacgctcatttatgcaacttttgtggctcttatgtgtgtgggtgttatggactgaacgtaataatagacagtttaataacaccaaaatttct 21663191  T
Q  131 actcatcagttgttcgaaaaggttcaaattaattcttactggtggttgaaagcagcaaatgca 193  Q
    | ||||||| | |||||||||||||||||| ||||||| |||||| |||| ||||||||||||    
T  21663192 attcatcagatattcgaaaaggttcaaattcattcttattggtggatgaatgcagcaaatgca 21663254  T

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Target: chr7; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 33 - 219
Target Start/End: Complemental strand, 45870987 - 45870801
Alignment:
Q  33 caactagacgttccttcatgcaacttttgtggcttttatgtgtgtgggtgttatggactgaatgtaataataggcactttaataacatcgtaatgaatac 132  Q
    |||||| ||| ||||| ||||| ||||||||||| |  ||||||||| ||||||| ||| ||||||||||||| |  ||||||||||  | ||  | ||     
T  45870987 caactaaacgctcctttatgcagcttttgtggctctcttgtgtgtggatgttatgcactaaatgtaataatagacggtttaataacactgaaactactat 45870888  T
Q  133 tcatcagttgttcgaaaaggttcaaattaattcttactggtggttgaaagcagcaaatgcagttcatgtgttgggggtgcataattg 219  Q
    |||||||||  | ||||||||||||||| ||||||  ||||||  ||| ||||||||||  |||||||| || ||| | ||||||||    
T  45870887 tcatcagttactagaaaaggttcaaattcattctttttggtggcggaaggcagcaaatgttgttcatgttttagggattcataattg 45870801  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 35 - 119
Target Start/End: Complemental strand, 25708282 - 25708198
Alignment:
Q  35 actagacgttccttcatgcaacttttgtggcttttatgtgtgtgggtgttatggactgaatgtaataataggcactttaataaca 119  Q
    |||||||| ||||| |||||||||||||||||||| | ||| ||| ||||||||  |||  ||||||||||||| ||||| ||||    
T  25708282 actagacgctcctttatgcaacttttgtggcttttgtatgtttggatgttatggtttgagcgtaataataggcaatttaacaaca 25708198  T

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Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 143 - 237
Target Start/End: Original strand, 42075041 - 42075135
Alignment:
Q  143 ttcgaaaaggttcaaattaattcttactggtggttgaaagcagcaaatgcagttcatgtgttgggggtgcataattgcctagcctgttctattct 237  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||  |||||| | |||||||    
T  42075041 ttcgaaaaggttcaaattaattcttactggtggttgaaagcagcaaaggcagttcatgtgttgggggtgcataattggatagcctatcctattct 42075135  T

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Target: chr8 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 33 - 210
Target Start/End: Original strand, 39903566 - 39903743
Alignment:
Q  33 caactagacgttccttcatgcaacttttgtggcttttatgtgtgtgggtgttatggactgaatgtaataataggcactttaataacatcgtaatgaatac 132  Q
    |||||| ||| || || ||||| || |||||||| |||||||||||||||||||||||||||  |||||||||||| || ||||||| || |   ||||     
T  39903566 caactaaacgatcatttatgcatctattgtggctcttatgtgtgtgggtgttatggactgaacataataataggcagttcaataacaccgaatctaatat 39903665  T
Q  133 tcatcagttgttcgaaaaggttcaaattaattcttactggtggttgaaagcagcaaatgcagttcatgtgttgggggt 210  Q
    |||||||||| | || ||  ||||||||||||||||||||||| |||| |||| |||||||||||||||||| |||||    
T  39903666 tcatcagttgcttgagaaaattcaaattaattcttactggtggctgaaggcaggaaatgcagttcatgtgttaggggt 39903743  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 71 - 209
Target Start/End: Complemental strand, 22627223 - 22627085
Alignment:
Q  71 tgtgtgtgggtgttatggactgaatgtaataataggcactttaataacatcgtaatgaatactcatcagttgttcgaaaaggttcaaattaattcttact 170  Q
    |||||||||||||||||||||||  |||||||||  || || || ||||||| ||    || |||||| ||| | ||||||||||||||  ||||||| |    
T  22627223 tgtgtgtgggtgttatggactgagcgtaataataaacagttcaacaacatcgaaaattctattcatcatttggttgaaaaggttcaaatccattcttatt 22627124  T
Q  171 ggtggttgaaagcagcaaatgcagttcatgtgttggggg 209  Q
    ||||| |||| ||| ||||||  ||||||||||| ||||    
T  22627123 ggtggctgaaggcaacaaatgttgttcatgtgtttgggg 22627085  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 106
Target Start/End: Original strand, 10393007 - 10393063
Alignment:
Q  50 atgcaacttttgtggcttttatgtgtgtgggtgttatggactgaatgtaataatagg 106  Q
    ||||||||||||||||| |||||||| |||||  | ||| | |||||||||||||||    
T  10393007 atgcaacttttgtggctcttatgtgtttgggttatgtggtcagaatgtaataatagg 10393063  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 100
Target Start/End: Complemental strand, 36239111 - 36239046
Alignment:
Q  35 actagacgttccttcatgcaacttttgtggcttttatgtgtgtgggtgttatggactgaatgtaat 100  Q
    |||||||||||||| || |||||||||||||| || ||||| ||| |||| ||| |||||||||||    
T  36239111 actagacgttcctttattcaacttttgtggctcttgtgtgtttggatgttctggtctgaatgtaat 36239046  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 106
Target Start/End: Original strand, 43689596 - 43689652
Alignment:
Q  50 atgcaacttttgtggcttttatgtgtgtgggtgttatggactgaatgtaataatagg 106  Q
    ||||||||| |||||||||||||||| ||||| || ||| |||||||||| ||||||    
T  43689596 atgcaacttgtgtggcttttatgtgtttgggttttgtggtctgaatgtaacaatagg 43689652  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 193
Target Start/End: Original strand, 2074946 - 2075075
Alignment:
Q  64 gcttttatgtgtgtgggtgttatggactgaatgtaataataggcactttaataacatcgtaatgaatactcatcagttgttcgaaaaggttcaaattaat 163  Q
    |||| ||||||||| ||||||||||||| ||  ||| ||||| || |||||||||| || |||   || |||||||   ||| |||||||||||||  ||    
T  2074946 gcttgtatgtgtgtaggtgttatggactaaacataacaatagacagtttaataacaccgaaatttctattcatcagagtttcaaaaaggttcaaatacat 2075045  T
Q  164 tcttactggtggttgaaagcagcaaatgca 193  Q
    ||||||| |||| |||| ||| | ||||||    
T  2075046 tcttacttgtggatgaaggcaactaatgca 2075075  T

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