View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8091_low_41 (Length: 250)
Name: NF8091_low_41
Description: NF8091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8091_low_41 |
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Alignment Details
Target: chr4 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 103 - 243
Target Start/End: Original strand, 13202468 - 13202608
Alignment:
| Q |
103 |
gtgagaaagtgaagggataaaacaactattttaagtcaaagactaataaatatattttaggtttgaaatgcataatattctctgcaaaaagaatgtaagt |
202 |
Q |
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| T |
13202468 |
gtgagaaagtgaagggataaaacaactattttaagtcaaagactaataaatatattttaggtttgaaatgcataatattctctgcaaaaagaatgtaagt |
13202567 |
T |
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| Q |
203 |
gggactgtggatggaccccaaaccccatcaagtctctgctt |
243 |
Q |
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| T |
13202568 |
gggactgtggatggaccccaaaccccatcaagtctttgctt |
13202608 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 13202366 - 13202407
Alignment:
| Q |
1 |
ctcttcttcaatccctcataattctgttctccactttcatta |
42 |
Q |
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| T |
13202366 |
ctcttcttcaatccctcataattctgttctccactttcatta |
13202407 |
T |
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