View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8091_low_45 (Length: 244)
Name: NF8091_low_45
Description: NF8091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8091_low_45 |
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| [»] scaffold0014 (1 HSPs) |
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Alignment Details
Target: scaffold0014 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 91 - 151
Target Start/End: Complemental strand, 133947 - 133887
Alignment:
| Q |
91 |
caagctccagatgtctattagttcgtcataatgttcagcaacaaaaaggggatctatttcg |
151 |
Q |
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||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |
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| T |
133947 |
caagctccagatgtctattagttcgtcgtaatgttcaacaacaaaaaggggatctatttcg |
133887 |
T |
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Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 91 - 151
Target Start/End: Complemental strand, 26229289 - 26229229
Alignment:
| Q |
91 |
caagctccagatgtctattagttcgtcataatgttcagcaacaaaaaggggatctatttcg |
151 |
Q |
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||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |
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| T |
26229289 |
caagctccagatgtctattagttcgtcgtagtgttcagcaacaaaaaggggatctatttcg |
26229229 |
T |
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Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 91 - 151
Target Start/End: Complemental strand, 33548789 - 33548729
Alignment:
| Q |
91 |
caagctccagatgtctattagttcgtcataatgttcagcaacaaaaaggggatctatttcg |
151 |
Q |
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||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |
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| T |
33548789 |
caagctccagatgtctattagttcgtcgtagtgttcagcaacaaaaaggggatctatttcg |
33548729 |
T |
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Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 91 - 151
Target Start/End: Original strand, 23961615 - 23961675
Alignment:
| Q |
91 |
caagctccagatgtctattagttcgtcataatgttcagcaacaaaaaggggatctatttcg |
151 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |
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| T |
23961615 |
caagctccagatgtctattagttcgtcgtaatgttcagcaacaaaaaggggatctttttcg |
23961675 |
T |
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