View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8091_low_52 (Length: 239)

Name: NF8091_low_52
Description: NF8091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8091_low_52
NF8091_low_52
[»] chr5 (1 HSPs)
chr5 (1-223)||(5509168-5509390)
[»] chr4 (2 HSPs)
chr4 (1-210)||(20444686-20444896)
chr4 (4-79)||(20432616-20432691)


Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 5509390 - 5509168
Alignment:
Q  1 atgtcttgttctaaaccccatcttttaagggaatgatagagatttttcaaagaagacagaacaacattaaggttgttttggtcttgttggcagaaagttg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5509390 atgtcttgttctaaaccccatcttttaagggaatgatagagatttttcaaagaagacagaacaacattaaggttgttttggtcttgttggcagaaagttg 5509291  T
Q  101 aggttttcccaacaatgttggtgatttttgatgaagggtaatatgggaaaatgtttaacctaagccaagtttcagctgataaaatgttgctagagaccat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5509290 aggttttcccaacaatgttggtgatttttgatgaagggtaatatgggaaaatgtttaacctaagccaagtttcagctgataaaatgttgctagagaccat 5509191  T
Q  201 gttaaggtcttcattgttcaaag 223  Q
    |||||||||||||||||||||||    
T  5509190 gttaaggtcttcattgttcaaag 5509168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 102; Significance: 9e-51; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 20444896 - 20444686
Alignment:
Q  1 atgtcttgttctaaaccccatcttttaagggaatgatagagatttttcaaagaagacagaacaacattaa---------ggtt---gttttggtcttgtt 88  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||         ||||   ||||||||||||||    
T  20444896 atgtcttgttctaaaccccatcttttgagggaatgatagagatttttcaaagaagacagaacaacattaaatttgttttggttttggttttggtcttgtt 20444797  T
Q  89 ggcagaaagttgaggttttcccaacaatgttggtgatttttgatgaagggtaatatgggaaaatgtttaacctaagccaagtttcagctgataaaatgtt 188  Q
    ||||||||||||||||||| |||||||| |||||  |||||            |||| ||||||||||||||||||||||||||||||||||||||||||    
T  20444796 ggcagaaagttgaggtttttccaacaatcttggtttttttt-----------ttatgagaaaatgtttaacctaagccaagtttcagctgataaaatgtt 20444708  T
Q  189 gctagagaccatgttaaggtct 210  Q
    |||||||||| ||||| |||||    
T  20444707 gctagagaccttgttacggtct 20444686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 4 - 79
Target Start/End: Complemental strand, 20432691 - 20432616
Alignment:
Q  4 tcttgttctaaaccccatcttttaagggaatgatagagatttttcaaagaagacagaacaacattaaggttgtttt 79  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20432691 tcttgttctaaaccccatcttttgagggaatgatagagatttttcaaagaagacagaacaacattaaggttgtttt 20432616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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