View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8091_low_53 (Length: 238)
Name: NF8091_low_53
Description: NF8091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8091_low_53 |
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Alignment Details
Target: chr5 (Bit Score: 184; Significance: 1e-99; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 19 - 218
Target Start/End: Complemental strand, 8537042 - 8536843
Alignment:
| Q |
19 |
acgcttttccatagaaattagggttccgaacttcttcaaggtaattctttctttcactccaattttgttcctaatcattcttcgttgttaatcaatcaat |
118 |
Q |
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| T |
8537042 |
acgcttttccatcgaaattagggttccgaacttcttcaaggtaattctttcttccactccaattttgttcctaatcattcttcgttgttaatcgatcaat |
8536943 |
T |
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| Q |
119 |
aatcaacatcatattctaatcataatcgctttcttaattctcaaattgaaagaaaccaactttttgtctcatgtttgattcttagtttctctttcgtcct |
218 |
Q |
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| T |
8536942 |
aatcaacatcatattctaatcataatcgctttcttaattctcaaattgaaagaaaccaactttttgtctcgtgtttgattcttagtttctctttcgtcct |
8536843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 19 - 123
Target Start/End: Original strand, 1598907 - 1599015
Alignment:
| Q |
19 |
acgcttttccatagaaattagggttccgaacttcttcaaggtaattctttctttcactccaattttgttcct----aatcattcttcgttgttaatcaat |
114 |
Q |
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| T |
1598907 |
acgcttttccatcgaaattagggttccgaacttcttcaaggtaattctttctttcactgcaattttcttcataatcaatcattcttcgttattaatcaat |
1599006 |
T |
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| Q |
115 |
caataatca |
123 |
Q |
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||||||||| |
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| T |
1599007 |
caataatca |
1599015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 33 - 77
Target Start/End: Complemental strand, 8530502 - 8530458
Alignment:
| Q |
33 |
aaattagggttccgaacttcttcaaggtaattctttctttcactc |
77 |
Q |
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| T |
8530502 |
aaattagggttcccaacttcttcaaggtaattctttctttcactc |
8530458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 163 - 223
Target Start/End: Original strand, 9073458 - 9073521
Alignment:
| Q |
163 |
attgaaagaaaccaactttttgtct---catgtttgattcttagtttctctttcgtcctctatg |
223 |
Q |
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| T |
9073458 |
attgaaagaaagcaactttttgtcttctcgtgtttgattcttagtttctttttcgtcctctatg |
9073521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 33 - 77
Target Start/End: Complemental strand, 9444607 - 9444563
Alignment:
| Q |
33 |
aaattagggttccgaacttcttcaaggtaattctttctttcactc |
77 |
Q |
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| T |
9444607 |
aaattagggttcccaacttcttcaaggtaattctttctttcactc |
9444563 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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