View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8091_low_54 (Length: 238)

Name: NF8091_low_54
Description: NF8091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8091_low_54
NF8091_low_54
[»] chr2 (9 HSPs)
chr2 (83-220)||(27081003-27081140)
chr2 (98-224)||(14108721-14108852)
chr2 (98-223)||(33382002-33382122)
chr2 (1-64)||(14108601-14108664)
chr2 (127-207)||(5722777-5722857)
chr2 (120-184)||(36330488-36330552)
chr2 (1-64)||(27080920-27080983)
chr2 (83-112)||(14108686-14108715)
chr2 (154-207)||(32971353-32971406)
[»] chr7 (16 HSPs)
chr7 (123-223)||(23777027-23777127)
chr7 (139-224)||(10595928-10596013)
chr7 (139-196)||(10596089-10596146)
chr7 (146-207)||(31305215-31305276)
chr7 (149-200)||(23803055-23803106)
chr7 (152-204)||(4922708-4922760)
chr7 (123-207)||(20335652-20335736)
chr7 (87-223)||(27305504-27305635)
chr7 (149-188)||(19367138-19367177)
chr7 (152-222)||(43341028-43341098)
chr7 (151-192)||(43951314-43951355)
chr7 (153-193)||(16813825-16813865)
chr7 (123-223)||(35912141-35912241)
chr7 (149-192)||(42731081-42731124)
chr7 (2-35)||(23803124-23803157)
chr7 (83-111)||(23777159-23777187)
[»] chr1 (12 HSPs)
chr1 (83-207)||(32567093-32567218)
chr1 (132-207)||(22786629-22786704)
chr1 (116-207)||(5993564-5993655)
chr1 (118-224)||(8812385-8812491)
chr1 (154-207)||(34821627-34821680)
chr1 (149-192)||(85712-85755)
chr1 (123-213)||(44011743-44011828)
chr1 (123-187)||(47930762-47930826)
chr1 (123-207)||(47756428-47756512)
chr1 (154-193)||(52247466-52247505)
chr1 (2-39)||(45376451-45376488)
chr1 (83-112)||(45376515-45376544)
[»] chr4 (24 HSPs)
chr4 (140-207)||(42540205-42540272)
chr4 (149-224)||(23780223-23780298)
chr4 (136-190)||(10350571-10350625)
chr4 (123-207)||(43955631-43955715)
chr4 (142-209)||(10334133-10334200)
chr4 (149-207)||(327041-327099)
chr4 (122-207)||(14126329-14126414)
chr4 (123-193)||(4485275-4485345)
chr4 (83-188)||(43364186-43364291)
chr4 (123-224)||(32896621-32896717)
chr4 (167-207)||(55149023-55149063)
chr4 (1-64)||(10395304-10395367)
chr4 (149-187)||(10381865-10381903)
chr4 (146-204)||(18740144-18740202)
chr4 (149-207)||(44833940-44833998)
chr4 (146-184)||(48141311-48141349)
chr4 (1-38)||(23780313-23780350)
chr4 (151-187)||(10395455-10395491)
chr4 (151-183)||(20678274-20678306)
chr4 (149-188)||(3257828-3257867)
chr4 (175-222)||(49761697-49761744)
chr4 (146-192)||(7672558-7672604)
chr4 (126-198)||(21188091-21188163)
chr4 (122-170)||(37255067-37255115)
[»] chr6 (8 HSPs)
chr6 (149-223)||(18271675-18271749)
chr6 (116-224)||(33427646-33427749)
chr6 (123-222)||(20836610-20836704)
chr6 (123-203)||(26403235-26403315)
chr6 (159-207)||(12127277-12127325)
chr6 (120-207)||(12852235-12852322)
chr6 (151-223)||(14569912-14569984)
chr6 (20-64)||(20836794-20836838)
[»] chr5 (14 HSPs)
chr5 (123-199)||(27514504-27514580)
chr5 (149-207)||(5131325-5131383)
chr5 (123-207)||(16489136-16489220)
chr5 (149-192)||(19914382-19914425)
chr5 (132-222)||(5791787-5791877)
chr5 (83-224)||(43259829-43259959)
chr5 (151-207)||(10476566-10476622)
chr5 (123-179)||(6644840-6644896)
chr5 (124-224)||(27946868-27946968)
chr5 (149-187)||(22920883-22920921)
chr5 (1-38)||(5131273-5131310)
chr5 (83-112)||(22920940-22920969)
chr5 (138-187)||(34325750-34325799)
chr5 (2-38)||(43259864-43259900)
[»] chr3 (16 HSPs)
chr3 (149-213)||(37152707-37152771)
chr3 (87-224)||(8473204-8473331)
chr3 (125-193)||(41264834-41264902)
chr3 (118-192)||(29630146-29630215)
chr3 (126-223)||(36436048-36436140)
chr3 (123-193)||(55216819-55216884)
chr3 (159-208)||(29596909-29596958)
chr3 (123-192)||(36343802-36343871)
chr3 (149-188)||(40654133-40654172)
chr3 (123-207)||(25653533-25653613)
chr3 (2-40)||(33186278-33186316)
chr3 (149-187)||(33186328-33186366)
chr3 (2-35)||(36343772-36343805)
chr3 (19-64)||(54801792-54801837)
chr3 (139-183)||(867537-867581)
chr3 (154-182)||(54801658-54801686)
[»] chr8 (6 HSPs)
chr8 (123-193)||(35699662-35699732)
chr8 (123-196)||(18605208-18605281)
chr8 (132-193)||(2259790-2259851)
chr8 (83-189)||(30595460-30595566)
chr8 (153-223)||(3639868-3639933)
chr8 (118-188)||(36700227-36700297)
[»] scaffold0024 (1 HSPs)
scaffold0024 (83-130)||(60114-60161)
[»] scaffold0086 (1 HSPs)
scaffold0086 (143-187)||(20688-20732)


Alignment Details
Target: chr2 (Bit Score: 67; Significance: 7e-30; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 83 - 220
Target Start/End: Original strand, 27081003 - 27081140
Alignment:
Q  83 aaaggtatcaataataacagttcagttcagcccgaaacaattcagttct-----aaatgcaaacagttcaattcagttcaattattttaaatttagcaaa 177  Q
    ||||||||||||||||| ||||||| ||||   |||||| ||||||||      ||||||||||||||||||||||||     |||||||||||||||||    
T  27081003 aaaggtatcaataataatagttcagatcagtttgaaacagttcagttcagttcaaaatgcaaacagttcaattcagtt-----attttaaatttagcaaa 27081097  T
Q  178 cagttcagttcagttcggttcagttttcattctgaagtgaacc 220  Q
    |||||||||||||||||||||||||||||||| ||| ||||||    
T  27081098 cagttcagttcagttcggttcagttttcattccgaactgaacc 27081140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 98 - 224
Target Start/End: Original strand, 14108721 - 14108852
Alignment:
Q  98 aacagttcagttcagcccgaaacaattcagtt-----ctaaatgcaaacagttcaattcagttcaattattttaaatttagcaaacagttcagttcagtt 192  Q
    |||||||||||||| |  ||||||||||||||     | |||||||||| ||||| |||| |||||||||||||||||||  ||||||||||||||||||    
T  14108721 aacagttcagttcaccttgaaacaattcagtttagttcgaaatgcaaactgttcagttcaattcaattattttaaatttaataaacagttcagttcagtt 14108820  T
Q  193 cggttcagttttcattctgaagtgaaccatgt 224  Q
    |||||||||||||||  |||| ||||||||||    
T  14108821 cggttcagttttcatcttgaactgaaccatgt 14108852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 98 - 223
Target Start/End: Original strand, 33382002 - 33382122
Alignment:
Q  98 aacagttcagttcagcccgaaacaattcagttctaaatgcaaacagttcaattcagttcaattattttaaatttagcaaacagttcagttcagttcggtt 197  Q
    ||||||||||||| |   |||||| |||| ||| ||||||||||||     || |||||| |||||||||| |||||||||| |||||||||||||||||    
T  33382002 aacagttcagttcggtttgaaacagttcaattcgaaatgcaaacag-----ttaagttcagttattttaaagttagcaaacaattcagttcagttcggtt 33382096  T
Q  198 cagttttcattctgaagtgaaccatg 223  Q
    ||||||| || | ||| |||||||||    
T  33382097 cagtttttatcccgaattgaaccatg 33382122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 14108601 - 14108664
Alignment:
Q  1 aaacaattcagtttggtttgaaacagttcagttcagtttggtaattaaaatttgatttcatttg 64  Q
    |||||||||||||||||| |||||| |||||||||||| ||||| ||||||||||||| |||||    
T  14108601 aaacaattcagtttggttcgaaacaattcagttcagttcggtaactaaaatttgatttaatttg 14108664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 127 - 207
Target Start/End: Complemental strand, 5722857 - 5722777
Alignment:
Q  127 gttctaaatgcaaacagttcaattcagttcaattattttaaatttagcaaacagttcagttcagttcggttcagttttcat 207  Q
    |||| ||||||||||| |||| |||| |||| ||||||||||||||||||| | |||| ||  |||||||||| |||||||    
T  5722857 gttcaaaatgcaaacaattcagttcaattcagttattttaaatttagcaaataattcaatttggttcggttcacttttcat 5722777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 120 - 184
Target Start/End: Original strand, 36330488 - 36330552
Alignment:
Q  120 caattcagttctaaatgcaaacagttcaattcagttcaattattttaaatttagcaaacagttca 184  Q
    ||||||||||| ||||||||| ||||| |||||||||| ||||||||| |||| |||| ||||||    
T  36330488 caattcagttcaaaatgcaaatagttcgattcagttcagttattttaattttaacaaatagttca 36330552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 27080920 - 27080983
Alignment:
Q  1 aaacaattcagtttggtttgaaacagttcagttcagtttggtaattaaaatttgatttcatttg 64  Q
    ||||| ||||||| | || ||||||||||||||||||||||||| |||||||  ||||||||||    
T  27080920 aaacagttcagttcgattcgaaacagttcagttcagtttggtaactaaaattcaatttcatttg 27080983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 112
Target Start/End: Original strand, 14108686 - 14108715
Alignment:
Q  83 aaaggtatcaataataacagttcagttcag 112  Q
    ||||||||||||||||||||||||||||||    
T  14108686 aaaggtatcaataataacagttcagttcag 14108715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 207
Target Start/End: Original strand, 32971353 - 32971406
Alignment:
Q  154 ttcaattattttaaatttagcaaacagttcagttcagttcggttcagttttcat 207  Q
    ||||||||||||||||||| ||||||| ||||||||  || ||| |||||||||    
T  32971353 ttcaattattttaaatttaccaaacagctcagttcaactcagtttagttttcat 32971406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 3e-26; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 123 - 223
Target Start/End: Complemental strand, 23777127 - 23777027
Alignment:
Q  123 ttcagttctaaatgcaaacagttcaattcagttcaattattttaaatttagcaaacagttcagttcagttcggttcagttttcattctgaagtgaaccat 222  Q
    |||||||| |||| |||||| |||| ||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| ||  ||| ||||||||    
T  23777127 ttcagttcaaaatacaaacatttcagttcagttcaattattttaaatttagcaaacagttcagtttagttcgattcagttttcgtttcgaactgaaccat 23777028  T
Q  223 g 223  Q
    |    
T  23777027 g 23777027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 139 - 224
Target Start/End: Complemental strand, 10596013 - 10595928
Alignment:
Q  139 aacagttcaattcagttcaattattttaaatttagcaaacagttcagttcagttcggttcagttttcattctgaagtgaaccatgt 224  Q
    ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |  || ||||||||||    
T  10596013 aacagttcagttcagttcagttattttaaatttagcaaacagttcagttcagttcggtttagttttcatcccaaactgaaccatgt 10595928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 139 - 196
Target Start/End: Complemental strand, 10596146 - 10596089
Alignment:
Q  139 aacagttcaattcagttcaattattttaaatttagcaaacagttcagttcagttcggt 196  Q
    ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  10596146 aacagttcagttcagttcagttattttaaatttagcaaacagttcagttcagttcggt 10596089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 146 - 207
Target Start/End: Complemental strand, 31305276 - 31305215
Alignment:
Q  146 caattcagttcaattattttaaatttagcaaacagttcagttcagttcggttcagttttcat 207  Q
    |||||||||||||||||||||||||||| |||||||||| ||| |||||||||| |||||||    
T  31305276 caattcagttcaattattttaaatttagtaaacagttcacttctgttcggttcatttttcat 31305215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 149 - 200
Target Start/End: Complemental strand, 23803106 - 23803055
Alignment:
Q  149 ttcagttcaattattttaaatttagcaaacagttcagttcagttcggttcag 200  Q
    ||||||||||||||||||||||||||||||| |||||||  |||||||||||    
T  23803106 ttcagttcaattattttaaatttagcaaacaattcagtttggttcggttcag 23803055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 152 - 204
Target Start/End: Original strand, 4922708 - 4922760
Alignment:
Q  152 agttcaattattttaaatttagcaaacagttcagttcagttcggttcagtttt 204  Q
    |||||| ||||||||||||||||||||| |||||||||||| || ||||||||    
T  4922708 agttcagttattttaaatttagcaaacaattcagttcagtttggatcagtttt 4922760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 123 - 207
Target Start/End: Complemental strand, 20335736 - 20335652
Alignment:
Q  123 ttcagttctaaatgcaaacagttcaattcagttcaattattttaaatttagcaaacagttcagttcagttcggttcagttttcat 207  Q
    |||||||| |||| |||||||||| |||  ||| |||||||||||||||| ||||||||||| | | ||||  ||||||||||||    
T  20335736 ttcagttccaaatacaaacagttcgatttggtttaattattttaaatttatcaaacagttcaatacggttcaattcagttttcat 20335652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 87 - 223
Target Start/End: Complemental strand, 27305635 - 27305504
Alignment:
Q  87 gtatcaataataacagttcagttcagcccgaaacaattcagttctaaatgcaaacagttcaattcagttcaattattttaaatttagcaaacagttcagt 186  Q
    ||||||||||||| | |||||||| |   |||||| |||| ||| |||||| ||||||||| || ||||     ||||||||||||||||||| | ||||    
T  27305635 gtatcaataataataattcagttcggtttgaaacagttcaattcaaaatgctaacagttcagtttagtt-----attttaaatttagcaaacaatgcagt 27305541  T
Q  187 tcagttcggttcagttttcattctgaagtgaaccatg 223  Q
    |   ||||||||||||||||| |||||  ||||||||    
T  27305540 ttgattcggttcagttttcatcctgaaccgaaccatg 27305504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 188
Target Start/End: Complemental strand, 19367177 - 19367138
Alignment:
Q  149 ttcagttcaattattttaaatttagcaaacagttcagttc 188  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  19367177 ttcagttcagttattttaaatttagcaaacagttcagttc 19367138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 152 - 222
Target Start/End: Complemental strand, 43341098 - 43341028
Alignment:
Q  152 agttcaattattttaaatttagcaaacagttcagttcagttcggttcagttttcattctgaagtgaaccat 222  Q
    |||||| |||||||||||||| |||||| ||||||| | || |||||||||||||| | ||| ||||||||    
T  43341098 agttcagttattttaaatttatcaaacaattcagtttaatttggttcagttttcatcccgaactgaaccat 43341028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 192
Target Start/End: Complemental strand, 43951355 - 43951314
Alignment:
Q  151 cagttcaattattttaaatttagcaaacagttcagttcagtt 192  Q
    ||||||||||||||||||||||||||||| || |||||||||    
T  43951355 cagttcaattattttaaatttagcaaacaatttagttcagtt 43951314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 193
Target Start/End: Original strand, 16813825 - 16813865
Alignment:
Q  153 gttcaattattttaaatttagcaaacagttcagttcagttc 193  Q
    ||||| |||||||||||||||||||||||||||||| ||||    
T  16813825 gttcagttattttaaatttagcaaacagttcagttcggttc 16813865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 223
Target Start/End: Original strand, 35912141 - 35912241
Alignment:
Q  123 ttcagttctaaatgcaaacagttcaattcagttcaattattttaaatttagcaaacagttcagttcagttcggttcagttttcattctgaagtgaaccat 222  Q
    |||||||| ||||||||||| || | ||  ||| | ||||||||||||||  ||||| |||||||  |||||||| ||||||||||  ||| ||||||||    
T  35912141 ttcagttcgaaatgcaaacaatttagtttggttaagttattttaaatttaaaaaacaattcagtttggttcggtttagttttcatttcgaactgaaccat 35912240  T
Q  223 g 223  Q
    |    
T  35912241 g 35912241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 149 - 192
Target Start/End: Complemental strand, 42731124 - 42731081
Alignment:
Q  149 ttcagttcaattattttaaatttagcaaacagttcagttcagtt 192  Q
    ||||||| | || |||||||||||||||||||||||||||||||    
T  42731124 ttcagttgagttcttttaaatttagcaaacagttcagttcagtt 42731081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 35
Target Start/End: Complemental strand, 23803157 - 23803124
Alignment:
Q  2 aacaattcagtttggtttgaaacagttcagttca 35  Q
    |||||||||||| |||||||||||||||||||||    
T  23803157 aacaattcagttcggtttgaaacagttcagttca 23803124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 111
Target Start/End: Complemental strand, 23777187 - 23777159
Alignment:
Q  83 aaaggtatcaataataacagttcagttca 111  Q
    |||||||||||||||||||||||||||||    
T  23777187 aaaggtatcaataataacagttcagttca 23777159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 83 - 207
Target Start/End: Complemental strand, 32567218 - 32567093
Alignment:
Q  83 aaaggtatcaataataacagttcagttcagcccgaa-acaattcagttctaaatgcaaacagttcaattcagttcaattattttaaatttagcaaacagt 181  Q
    |||||||||||||||||||||||||||| |   ||| ||||| || ||| |||||||||||||||| ||| ||||| |||||||||||| |  ||||| |    
T  32567218 aaaggtatcaataataacagttcagttcggtttgaacacaatccaattcgaaatgcaaacagttcagttcggttcagttattttaaattcaataaacaat 32567119  T
Q  182 tcagttcagttcggttcagttttcat 207  Q
    |||||| |||||||||||||||||||    
T  32567118 tcagtttagttcggttcagttttcat 32567093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 132 - 207
Target Start/End: Original strand, 22786629 - 22786704
Alignment:
Q  132 aaatgcaaacagttcaattcagttcaattattttaaatttagcaaacagttcagttcagttcggttcagttttcat 207  Q
    |||||| |||||||   |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  22786629 aaatgcgaacagtttggttcagttcaattattttaaatttagcaaacagttcagttcggttcggttcagttttcat 22786704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 116 - 207
Target Start/End: Complemental strand, 5993655 - 5993564
Alignment:
Q  116 gaaacaattcagttctaaatgcaaacagttcaattcagttcaattattttaaatttagcaaacagttcagttcagttcggttcagttttcat 207  Q
    ||||||||||||||| ||||||||||| ||   || ||||||||||||||||||||||| |||| |||| || ||||||||||| |||||||    
T  5993655 gaaacaattcagttcgaaatgcaaacaatttggtttagttcaattattttaaatttagcgaacaattcaatttagttcggttcaattttcat 5993564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 118 - 224
Target Start/End: Complemental strand, 8812491 - 8812385
Alignment:
Q  118 aacaattcagttctaaatgcaaacagttcaattcagttcaattattttaaatttagcaaacagttcagttcagttcggttcagttttcattctgaagtga 217  Q
    |||| |||||||| |||||||||||||| | |||| |||| ||||||||||||||  ||| |||||||||  ||| |||| ||||||||||| ||  |||    
T  8812491 aacatttcagttcgaaatgcaaacagtttagttcaattcagttattttaaatttaataaatagttcagttttgtttggtttagttttcattccgatctga 8812392  T
Q  218 accatgt 224  Q
    |||||||    
T  8812391 accatgt 8812385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 154 - 207
Target Start/End: Complemental strand, 34821680 - 34821627
Alignment:
Q  154 ttcaattattttaaatttagcaaacagttcagttcagttcggttcagttttcat 207  Q
    |||| |||||||||||||||||||||||||||||| ||| ||||||||||||||    
T  34821680 ttcagttattttaaatttagcaaacagttcagttcggtttggttcagttttcat 34821627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 149 - 192
Target Start/End: Complemental strand, 85755 - 85712
Alignment:
Q  149 ttcagttcaattattttaaatttagcaaacagttcagttcagtt 192  Q
    |||| |||||||||||||||||||||||||||||||||||||||    
T  85755 ttcaattcaattattttaaatttagcaaacagttcagttcagtt 85712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 123 - 213
Target Start/End: Complemental strand, 44011828 - 44011743
Alignment:
Q  123 ttcagttctaaatgcaaacagttcaattcagttcaattattttaaatttagcaaacagttcagttcagttcggttcagttttcattctgaa 213  Q
    |||||||| |||||||||||||||| |||||||     || ||||||||| ||||||||||||||| ||||| ||||||||| || |||||    
T  44011828 ttcagttcgaaatgcaaacagttcagttcagtt-----atattaaatttatcaaacagttcagttcggttcgattcagttttaatcctgaa 44011743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 123 - 187
Target Start/End: Complemental strand, 47930826 - 47930762
Alignment:
Q  123 ttcagttctaaatgcaaacagttcaattcagttcaattattttaaatttagcaaacagttcagtt 187  Q
    |||| ||| |||||||||||||||  |||| || ||||||||||||||||||||||| |||||||    
T  47930826 ttcaattcgaaatgcaaacagttcggttcattttaattattttaaatttagcaaacaattcagtt 47930762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 207
Target Start/End: Original strand, 47756428 - 47756512
Alignment:
Q  123 ttcagttctaaatgcaaacagttcaattcagttcaattattttaaatttagcaaacagttcagttcagttcggttcagttttcat 207  Q
    |||||||| ||||||||| | |||  ||||||| | || ||||| ||||| |||  ||||||||||||||||||||| |||||||    
T  47756428 ttcagttcgaaatgcaaaaaattcggttcagtttagttgttttacatttaacaagtagttcagttcagttcggttcaattttcat 47756512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 193
Target Start/End: Original strand, 52247466 - 52247505
Alignment:
Q  154 ttcaattattttaaatttagcaaacagttcagttcagttc 193  Q
    ||||||||||||||||||| ||||||||||||||| ||||    
T  52247466 ttcaattattttaaatttaacaaacagttcagttcggttc 52247505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 39
Target Start/End: Complemental strand, 45376488 - 45376451
Alignment:
Q  2 aacaattcagtttggtttgaaacagttcagttcagttt 39  Q
    |||| ||||||| |||||||||||||||||||||||||    
T  45376488 aacagttcagttcggtttgaaacagttcagttcagttt 45376451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 112
Target Start/End: Complemental strand, 45376544 - 45376515
Alignment:
Q  83 aaaggtatcaataataacagttcagttcag 112  Q
    ||||||||||||||||||||||||||||||    
T  45376544 aaaggtatcaataataacagttcagttcag 45376515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 2e-23; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 140 - 207
Target Start/End: Complemental strand, 42540272 - 42540205
Alignment:
Q  140 acagttcaattcagttcaattattttaaatttagcaaacagttcagttcagttcggttcagttttcat 207  Q
    |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||    
T  42540272 acagttcagttcagttcaattattttaaatttagcaaacaattcagttcagttcggttctgttttcat 42540205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 149 - 224
Target Start/End: Complemental strand, 23780298 - 23780223
Alignment:
Q  149 ttcagttcaattattttaaatttagcaaacagttcagttcagttcggttcagttttcattctgaagtgaaccatgt 224  Q
    |||||||||||||||||| |||||||||||| || |||||| ||||||||||||||||| | ||| ||||||||||    
T  23780298 ttcagttcaattattttagatttagcaaacaattaagttcaattcggttcagttttcatcccgaactgaaccatgt 23780223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 136 - 190
Target Start/End: Complemental strand, 10350625 - 10350571
Alignment:
Q  136 gcaaacagttcaattcagttcaattattttaaatttagcaaacagttcagttcag 190  Q
    ||||||||||||||||||||||||||||||||||||| |||||| ||||||||||    
T  10350625 gcaaacagttcaattcagttcaattattttaaatttaacaaacaattcagttcag 10350571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 123 - 207
Target Start/End: Original strand, 43955631 - 43955715
Alignment:
Q  123 ttcagttctaaatgcaaacagttcaattcagttcaattattttaaatttagcaaacagttcagttcagttcggttcagttttcat 207  Q
    |||||||| ||||||||||||||| ||| |||||| |||||||||||||| |||  |||| | ||| ||||||||||||||||||    
T  43955631 ttcagttcgaaatgcaaacagttcgattaagttcagttattttaaatttaacaagtagtttaattcggttcggttcagttttcat 43955715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 142 - 209
Target Start/End: Complemental strand, 10334200 - 10334133
Alignment:
Q  142 agttcaattcagttcaattattttaaatttagcaaacagttcagttcagttcggttcagttttcattc 209  Q
    |||||||||||||||||||||||| |||||| |||||| |||||||| ||||  ||||||||||||||    
T  10334200 agttcaattcagttcaattattttgaatttaacaaacaattcagttcggttcaattcagttttcattc 10334133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 149 - 207
Target Start/End: Complemental strand, 327099 - 327041
Alignment:
Q  149 ttcagttcaattattttaaatttagcaaacagttcagttcagttcggttcagttttcat 207  Q
    ||||||||| ||||||||||||||||||||| ||||||| ||||||||||| |||||||    
T  327099 ttcagttcagttattttaaatttagcaaacaattcagtttagttcggttcatttttcat 327041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 122 - 207
Target Start/End: Complemental strand, 14126414 - 14126329
Alignment:
Q  122 attcagttctaaatgcaaacagttcaattcagttcaattattttaaatttagcaaacagttcagttcagttcggttcagttttcat 207  Q
    ||||| ||| |||| ||||||||||| ||  ||||| || ||||||||||||||||||||| ||||| ||||| ||||||||||||    
T  14126414 attcaattcgaaatacaaacagttcagtttggttcagtttttttaaatttagcaaacagttgagttcggttcgattcagttttcat 14126329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 123 - 193
Target Start/End: Complemental strand, 4485345 - 4485275
Alignment:
Q  123 ttcagttctaaatgcaaacagttcaattcagttcaattattttaaatttagcaaacagttcagttcagttc 193  Q
    |||||||  ||||||||||||||| ||||| |||| ||||||||||| ||||||||| |||||||| ||||    
T  4485345 ttcagtttaaaatgcaaacagttcgattcatttcagttattttaaatctagcaaacaattcagttcggttc 4485275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 83 - 188
Target Start/End: Original strand, 43364186 - 43364291
Alignment:
Q  83 aaaggtatcaataataacagttcagttcagcccgaaacaattcagttcta-----aatgcaaacagttcaattcagttcaattattttaaatttagcaaa 177  Q
    |||||||||||||||||||||||||||| |    ||||| |||||||| |     ||||||||||||||| |||||||     |||||||||||||||||    
T  43364186 aaaggtatcaataataacagttcagttcggtttaaaacagttcagttcgattcgaaatgcaaacagttcagttcagtt-----attttaaatttagcaaa 43364280  T
Q  178 cagttcagttc 188  Q
    |||||||||||    
T  43364281 cagttcagttc 43364291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 123 - 224
Target Start/End: Original strand, 32896621 - 32896717
Alignment:
Q  123 ttcagttctaaatgcaaacagttcaattcagttcaattattttaaatttagcaaacagttcagttcagttcggttcagttttcattctgaagtgaaccat 222  Q
    |||||||| |||||||||||||||  ||||  ||| |||| ||||||||||||||||||     ||||||||||| |||||| |||| ||||||| ||||    
T  32896621 ttcagttcaaaatgcaaacagttcggttcaactcagttatcttaaatttagcaaacagt-----tcagttcggtttagtttttattccgaagtgagccat 32896715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 167 - 207
Target Start/End: Complemental strand, 55149063 - 55149023
Alignment:
Q  167 aatttagcaaacagttcagttcagttcggttcagttttcat 207  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  55149063 aatttagcaaacagttaagttcagttcggttcagttttcat 55149023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 10395304 - 10395367
Alignment:
Q  1 aaacaattcagtttggtttgaaacagttcagttcagtttggtaattaaaatttgatttcatttg 64  Q
    ||||| ||||||| | |||||||| ||||||||||||| |||||||||||||  ||||||||||    
T  10395304 aaacagttcagttcgatttgaaactgttcagttcagttcggtaattaaaattcaatttcatttg 10395367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 149 - 187
Target Start/End: Complemental strand, 10381903 - 10381865
Alignment:
Q  149 ttcagttcaattattttaaatttagcaaacagttcagtt 187  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  10381903 ttcagttcatttattttaaatttagcaaacagttcagtt 10381865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 146 - 204
Target Start/End: Original strand, 18740144 - 18740202
Alignment:
Q  146 caattcagttcaattattttaaatttagcaaacagttcagttcagttcggttcagtttt 204  Q
    ||||||||||| |||||||||||||||||||| |||||| ||   ||||||||||||||    
T  18740144 caattcagttctattattttaaatttagcaaatagttcattttgattcggttcagtttt 18740202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 149 - 207
Target Start/End: Complemental strand, 44833998 - 44833940
Alignment:
Q  149 ttcagttcaattattttaaatttagcaaacagttcagttcagttcggttcagttttcat 207  Q
    ||||||||| |||||||||||||||||||||||||| ||   ||||||||| |||||||    
T  44833998 ttcagttcagttattttaaatttagcaaacagttcaatttgattcggttcaattttcat 44833940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 146 - 184
Target Start/End: Original strand, 48141311 - 48141349
Alignment:
Q  146 caattcagttcaattattttaaatttagcaaacagttca 184  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  48141311 caattcagttcagttattttaaatttagcaaacagttca 48141349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 23780350 - 23780313
Alignment:
Q  1 aaacaattcagtttggtttgaaacagttcagttcagtt 38  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  23780350 aaacagttcagtttggtttgaaacagttcagttcagtt 23780313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 187
Target Start/End: Original strand, 10395455 - 10395491
Alignment:
Q  151 cagttcaattattttaaatttagcaaacagttcagtt 187  Q
    ||||||| |||||||||||||||||||||||||||||    
T  10395455 cagttcagttattttaaatttagcaaacagttcagtt 10395491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 183
Target Start/End: Complemental strand, 20678306 - 20678274
Alignment:
Q  151 cagttcaattattttaaatttagcaaacagttc 183  Q
    |||||||||||||||||||||||||||||||||    
T  20678306 cagttcaattattttaaatttagcaaacagttc 20678274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 149 - 188
Target Start/End: Original strand, 3257828 - 3257867
Alignment:
Q  149 ttcagttcaattattttaaatttagcaaacagttcagttc 188  Q
    ||||||||||||||| |||||||| |||||||||||||||    
T  3257828 ttcagttcaattattataaatttaccaaacagttcagttc 3257867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 222
Target Start/End: Complemental strand, 49761744 - 49761697
Alignment:
Q  175 aaacagttcagttcagttcggttcagttttcattctgaagtgaaccat 222  Q
    |||||||| |||||||||||||||||||||||||| ||| | ||||||    
T  49761744 aaacagtttagttcagttcggttcagttttcattccgaacttaaccat 49761697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 192
Target Start/End: Complemental strand, 7672604 - 7672558
Alignment:
Q  146 caattcagttcaattattttaaatttagcaaacagttcagttcagtt 192  Q
    ||||| |||||| ||||||||||||||||||||||||| ||| ||||    
T  7672604 caatttagttcagttattttaaatttagcaaacagttctgtttagtt 7672558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 198
Target Start/End: Complemental strand, 21188163 - 21188091
Alignment:
Q  126 agttctaaatgcaaacagttcaattcagttcaattattttaaatttagcaaacagttcagttcagttcggttc 198  Q
    ||||| |||| |||||||||  |||| ||| ||| |||||||||||| ||||||||||  ||| |||||||||    
T  21188163 agttcaaaatacaaacagtttgattcggtttaataattttaaatttatcaaacagttccattcggttcggttc 21188091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 170
Target Start/End: Original strand, 37255067 - 37255115
Alignment:
Q  122 attcagttctaaatgcaaacagttcaattcagttcaattattttaaatt 170  Q
    ||||||||| ||||||||||| |||  ||||||||| ||||||||||||    
T  37255067 attcagttcgaaatgcaaacaattcggttcagttcagttattttaaatt 37255115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 149 - 223
Target Start/End: Complemental strand, 18271749 - 18271675
Alignment:
Q  149 ttcagttcaattattttaaatttagcaaacagttcagttcagttcggttcagttttcattctgaagtgaaccatg 223  Q
    ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| | ||| |||||||||    
T  18271749 ttcagttcagttattttaaatttagcacacagttcagttcagttcggttcagttttcatccagaactgaaccatg 18271675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 116 - 224
Target Start/End: Complemental strand, 33427749 - 33427646
Alignment:
Q  116 gaaacaattcagttctaaatgcaaacagttcaattcagttcaattattttaaatttagcaaacagttcagttcagttcggttcagttttcattctgaagt 215  Q
    |||||| |||||||| ||||||||||||||||||||||||     |||||||||||| |||| | ||||||| ||||||||||||||||||||| ||| |    
T  33427749 gaaacagttcagttcaaaatgcaaacagttcaattcagtt-----attttaaatttaacaaataattcagtttagttcggttcagttttcattccgaact 33427655  T
Q  216 gaaccatgt 224  Q
    |||| ||||    
T  33427654 gaacaatgt 33427646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 123 - 222
Target Start/End: Complemental strand, 20836704 - 20836610
Alignment:
Q  123 ttcagttctaaatgcaaacagttcaattcagttcaattattttaaatttagcaaacagttcagttcagttcggttcagttttcattctgaagtgaaccat 222  Q
    |||||||| |||||||||||||||| |||||||     |||||| ||||||||||||||| |||||||||||||||||||||||| | ||| ||||||||    
T  20836704 ttcagttcgaaatgcaaacagttcagttcagtt-----attttagatttagcaaacagtttagttcagttcggttcagttttcatcccgaactgaaccat 20836610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 123 - 203
Target Start/End: Complemental strand, 26403315 - 26403235
Alignment:
Q  123 ttcagttctaaatgcaaacagttcaattcagttcaattattttaaatttagcaaacagttcagttcagttcggttcagttt 203  Q
    |||||||  |||| |||||||||   |||| |||| |||||||||||||| |||||||| |||||||||||||||| ||||    
T  26403315 ttcagtttgaaattcaaacagtttggttcaattcagttattttaaatttatcaaacagtccagttcagttcggttcggttt 26403235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 207
Target Start/End: Complemental strand, 12127325 - 12127277
Alignment:
Q  159 ttattttaaatttagcaaacagttcagttcagttcggttcagttttcat 207  Q
    ||||||| ||||| ||||||||||||||| ||||||||| |||||||||    
T  12127325 ttattttgaatttcgcaaacagttcagtttagttcggttaagttttcat 12127277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 207
Target Start/End: Original strand, 12852235 - 12852322
Alignment:
Q  120 caattcagttctaaatgcaaacagttcaattcagttcaattattttaaatttagcaaacagttcagttcagttcggttcagttttcat 207  Q
    ||||| ||||| |||| ||||| |||| ||| |||| | || ||||||||||| |||||| || || || ||||||||||||||||||    
T  12852235 caattaagttcaaaatacaaacggttcgatttagtttagttgttttaaatttaacaaacaatttagatcggttcggttcagttttcat 12852322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 223
Target Start/End: Original strand, 14569912 - 14569984
Alignment:
Q  151 cagttcaattattttaaatttagcaaacagttcagttcagttcggttcagttttcattctgaagtgaaccatg 223  Q
    ||||||| |||||||||| |||  |||||||| |||| | || | |||||||||||| ||||| |||||||||    
T  14569912 cagttcagttattttaaacttaataaacagtttagtttaatttgattcagttttcatcctgaattgaaccatg 14569984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 20836838 - 20836794
Alignment:
Q  20 gaaacagttcagttcagtttggtaattaaaatttgatttcatttg 64  Q
    ||||||||||||||||||| ||||| |||||||  ||||||||||    
T  20836838 gaaacagttcagttcagttcggtaactaaaattcaatttcatttg 20836794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 123 - 199
Target Start/End: Original strand, 27514504 - 27514580
Alignment:
Q  123 ttcagttctaaatgcaaacagttcaattcagttcaattattttaaatttagcaaacagttcagttcagttcggttca 199  Q
    |||||||| ||||||||||| || | |||||||||||||||| ||||||| |||||||||||||||| |||||||||    
T  27514504 ttcagttcgaaatgcaaacaatttagttcagttcaattatttaaaatttaacaaacagttcagttcaattcggttca 27514580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 149 - 207
Target Start/End: Original strand, 5131325 - 5131383
Alignment:
Q  149 ttcagttcaattattttaaatttagcaaacagttcagttcagttcggttcagttttcat 207  Q
    |||||||| |||||||||||||||||||| |||| ||||||||||||||||||||||||    
T  5131325 ttcagttctattattttaaatttagcaaatagtttagttcagttcggttcagttttcat 5131383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 123 - 207
Target Start/End: Complemental strand, 16489220 - 16489136
Alignment:
Q  123 ttcagttctaaatgcaaacagttcaattcagttcaattattttaaatttagcaaacagttcagttcagttcggttcagttttcat 207  Q
    |||||||  |||| ||||| |||  |||||||||||||||||||||||||  ||| | |||||||| ||||||||||||||||||    
T  16489220 ttcagtttaaaatacaaaccgtttgattcagttcaattattttaaatttaataaataattcagttcggttcggttcagttttcat 16489136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 149 - 192
Target Start/End: Complemental strand, 19914425 - 19914382
Alignment:
Q  149 ttcagttcaattattttaaatttagcaaacagttcagttcagtt 192  Q
    ||||||||| ||||||||||||||||||||||||||||||||||    
T  19914425 ttcagttcagttattttaaatttagcaaacagttcagttcagtt 19914382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 132 - 222
Target Start/End: Complemental strand, 5791877 - 5791787
Alignment:
Q  132 aaatgcaaacagttcaattcagttcaattattttaaatttagcaaacagttcagttcagttcggttcagttttcattctgaagtgaaccat 222  Q
    |||||||||||||| | |||| || | |||||||||||||| |||||||||||||| || | ||||  |||||||| || |||||||||||    
T  5791877 aaatgcaaacagttgagttcacttaagttattttaaatttaacaaacagttcagtttagattggtttggttttcatcctaaagtgaaccat 5791787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 83 - 224
Target Start/End: Original strand, 43259829 - 43259959
Alignment:
Q  83 aaaggtatcaataataacagttcagttcagcccgaaacaattcagttctaaatgcaaacagttcaattcagttcaattattttaaatttagcaaacagtt 182  Q
    ||||| ||||||||||||||||||||||||  || |||| ||||||||    || |||||||||| |||||||     |||||||||||| ||||||||     
T  43259829 aaaggcatcaataataacagttcagttcagttcggaacagttcagttcggtttg-aaacagttcagttcagtt-----attttaaatttaacaaacagt- 43259921  T
Q  183 cagttcagttcggttcagttttcattctgaagtgaaccatgt 224  Q
        |||||||| |||||||||||| ||||| ||||||||||    
T  43259922 ----tcagttcgattcagttttcatcctgaactgaaccatgt 43259959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 151 - 207
Target Start/End: Original strand, 10476566 - 10476622
Alignment:
Q  151 cagttcaattattttaaatttagcaaacagttcagttcagttcggttcagttttcat 207  Q
    ||||||| |||||||||||||| ||||||||||||||  |||||||||| |||||||    
T  10476566 cagttcagttattttaaatttaacaaacagttcagttttgttcggttcaattttcat 10476622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 179
Target Start/End: Original strand, 6644840 - 6644896
Alignment:
Q  123 ttcagttctaaatgcaaacagttcaattcagttcaattattttaaatttagcaaaca 179  Q
    |||||||| ||||||||| |||||  |||| |||| |||||||||||||||||||||    
T  6644840 ttcagttcgaaatgcaaatagttcggttcaattcagttattttaaatttagcaaaca 6644896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 124 - 224
Target Start/End: Complemental strand, 27946968 - 27946868
Alignment:
Q  124 tcagttctaaatgcaaacagttcaattcagttcaattattttaaatttagcaaacagttcagttcagttcggttcagttttcattctgaagtgaaccatg 223  Q
    ||||||| |||| |||||| |||| ||||||| | |||||||||||||| |||||| |||||||   |||||| || ||||||| |  || |||||||||    
T  27946968 tcagttcgaaatacaaacaattcagttcagtttagttattttaaatttaacaaacaattcagtttgattcggtacatttttcatcccaaactgaaccatg 27946869  T
Q  224 t 224  Q
    |    
T  27946868 t 27946868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 187
Target Start/End: Complemental strand, 22920921 - 22920883
Alignment:
Q  149 ttcagttcaattattttaaatttagcaaacagttcagtt 187  Q
    ||||||||| ||||||||||||||||||| |||||||||    
T  22920921 ttcagttcagttattttaaatttagcaaatagttcagtt 22920883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 5131273 - 5131310
Alignment:
Q  1 aaacaattcagtttggtttgaaacagttcagttcagtt 38  Q
    ||||| ||||||| ||||||||||||||||||||||||    
T  5131273 aaacagttcagttcggtttgaaacagttcagttcagtt 5131310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 112
Target Start/End: Complemental strand, 22920969 - 22920940
Alignment:
Q  83 aaaggtatcaataataacagttcagttcag 112  Q
    ||||||||||||||||||||||||||||||    
T  22920969 aaaggtatcaataataacagttcagttcag 22920940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 187
Target Start/End: Original strand, 34325750 - 34325799
Alignment:
Q  138 aaacagttcaattcagttcaattattttaaatttagcaaacagttcagtt 187  Q
    |||||||| | ||||||||||||||||||||||||  ||||| |||||||    
T  34325750 aaacagttgagttcagttcaattattttaaatttaataaacaattcagtt 34325799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 43259864 - 43259900
Alignment:
Q  2 aacaattcagtttggtttgaaacagttcagttcagtt 38  Q
    |||| ||||||| ||||||||||||||||||||||||    
T  43259864 aacagttcagttcggtttgaaacagttcagttcagtt 43259900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 149 - 213
Target Start/End: Original strand, 37152707 - 37152771
Alignment:
Q  149 ttcagttcaattattttaaatttagcaaacagttcagttcagttcggttcagttttcattctgaa 213  Q
    ||||||||| |||||||||||||||||||||||||| || ||||||||||| |||||||||||||    
T  37152707 ttcagttcagttattttaaatttagcaaacagttcaatttagttcggttcaattttcattctgaa 37152771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 87 - 224
Target Start/End: Original strand, 8473204 - 8473331
Alignment:
Q  87 gtatcaataataacagttcagttcagcccgaaacaattcagttctaaatgcaaacagttcaattcagttcaattattttaaatttagcaaacagttcagt 186  Q
    ||||||||||||||||||| ||||||  || |||| |||| ||| ||||||||| ||     ||||||||| ||| |||| ||||||||||     ||||    
T  8473204 gtatcaataataacagttcggttcagttcggaacagttcaattcaaaatgcaaagag-----ttcagttcagttagtttagatttagcaaa-----cagt 8473293  T
Q  187 tcagttcggttcagttttcattctgaagtgaaccatgt 224  Q
    |||||||| |||||||||||| ||||| ||||||||||    
T  8473294 tcagttcgattcagttttcatcctgaactgaaccatgt 8473331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 125 - 193
Target Start/End: Complemental strand, 41264902 - 41264834
Alignment:
Q  125 cagttctaaatgcaaacagttcaattcagttcaattattttaaatttagcaaacagttcagttcagttc 193  Q
    |||||| |||| |||||| ||| ||||||||||||||||||||||||| ||||||||||  ||||||||    
T  41264902 cagttcaaaatacaaacaattcgattcagttcaattattttaaatttaacaaacagttcgattcagttc 41264834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 118 - 192
Target Start/End: Original strand, 29630146 - 29630215
Alignment:
Q  118 aacaattcagttctaaatgcaaacagttcaattcagttcaattattttaaatttagcaaacagttcagttcagtt 192  Q
    |||| |||||||| |||||||||||||||| |||||||     |||| |||||||||||||||||||||||||||    
T  29630146 aacagttcagttcgaaatgcaaacagttcagttcagtt-----atttcaaatttagcaaacagttcagttcagtt 29630215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 126 - 223
Target Start/End: Complemental strand, 36436140 - 36436048
Alignment:
Q  126 agttctaaatgcaaacagttcaattcagttcaattattttaaatttagcaaacagttcagttcagttcggttcagttttcattctgaagtgaaccatg 223  Q
    ||||| ||||| ||||||||||||| ||     |||||||||||||||||||||||||| ||  ||||||||| |||||||| | ||| |||||||||    
T  36436140 agttcgaaatggaaacagttcaatttag-----ttattttaaatttagcaaacagttcaatttggttcggttctgttttcatcccgaactgaaccatg 36436048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 123 - 193
Target Start/End: Original strand, 55216819 - 55216884
Alignment:
Q  123 ttcagttctaaatgcaaacagttcaattcagttcaattattttaaatttagcaaacagttcagttcagttc 193  Q
    |||||||| |||||||||||||||| |||||||     |||||||||||| |||| |||||||||||||||    
T  55216819 ttcagttcgaaatgcaaacagttcagttcagtt-----attttaaatttaacaaatagttcagttcagttc 55216884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 159 - 208
Target Start/End: Complemental strand, 29596958 - 29596909
Alignment:
Q  159 ttattttaaatttagcaaacagttcagttcagttcggttcagttttcatt 208  Q
    ||||||| ||||||| |||||||||||||  |||||||||||||||||||    
T  29596958 ttattttgaatttagtaaacagttcagtttggttcggttcagttttcatt 29596909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 192
Target Start/End: Original strand, 36343802 - 36343871
Alignment:
Q  123 ttcagttctaaatgcaaacagttcaattcagttcaattattttaaatttagcaaacagttcagttcagtt 192  Q
    |||| ||| ||||||||||| || | |||| ||||||||||||||||||| || |||||||| |||||||    
T  36343802 ttcaattcaaaatgcaaacaatttagttcaattcaattattttaaatttaacatacagttcaattcagtt 36343871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 149 - 188
Target Start/End: Complemental strand, 40654172 - 40654133
Alignment:
Q  149 ttcagttcaattattttaaatttagcaaacagttcagttc 188  Q
    ||||||||| |||||||||||||| |||||||||||||||    
T  40654172 ttcagttcagttattttaaatttaacaaacagttcagttc 40654133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 207
Target Start/End: Original strand, 25653533 - 25653613
Alignment:
Q  123 ttcagttctaaatgcaaacagttcaattcagttcaattattttaaatttagcaaacagttcagttcagttcggttcagttttcat 207  Q
    |||||||  ||||||||||||| | ||||||||  ||  ||||||||||| ||||||||| |||||  |||||||||||||||||    
T  25653533 ttcagtttaaaatgcaaacagtacgattcagtt--at--ttttaaatttatcaaacagtttagttcgattcggttcagttttcat 25653613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 40
Target Start/End: Original strand, 33186278 - 33186316
Alignment:
Q  2 aacaattcagtttggtttgaaacagttcagttcagtttg 40  Q
    |||||||||||| |||||||||||||||| |||||||||    
T  33186278 aacaattcagttcggtttgaaacagttcaattcagtttg 33186316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 187
Target Start/End: Original strand, 33186328 - 33186366
Alignment:
Q  149 ttcagttcaattattttaaatttagcaaacagttcagtt 187  Q
    ||||||||| |||||||||||||| ||||||||||||||    
T  33186328 ttcagttcagttattttaaatttaacaaacagttcagtt 33186366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 35
Target Start/End: Original strand, 36343772 - 36343805
Alignment:
Q  2 aacaattcagtttggtttgaaacagttcagttca 35  Q
    |||| |||||||||||||||||||||||||||||    
T  36343772 aacagttcagtttggtttgaaacagttcagttca 36343805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 54801837 - 54801792
Alignment:
Q  19 tgaaacagttcagttcagtttggtaattaaaatttgatttcatttg 64  Q
    |||||||||||||||||||| ||||| ||||||| |||||| ||||    
T  54801837 tgaaacagttcagttcagttcggtaactaaaattcgatttcgtttg 54801792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 183
Target Start/End: Original strand, 867537 - 867581
Alignment:
Q  139 aacagttcaattcagttcaattattttaaatttagcaaacagttc 183  Q
    ||||||||  ||||||||| |||||||||||||| ||||||||||    
T  867537 aacagttcggttcagttcagttattttaaatttaccaaacagttc 867581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 182
Target Start/End: Complemental strand, 54801686 - 54801658
Alignment:
Q  154 ttcaattattttaaatttagcaaacagtt 182  Q
    |||||||||||||||||||||||||||||    
T  54801686 ttcaattattttaaatttagcaaacagtt 54801658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 123 - 193
Target Start/End: Original strand, 35699662 - 35699732
Alignment:
Q  123 ttcagttctaaatgcaaacagttcaattcagttcaattattttaaatttagcaaacagttcagttcagttc 193  Q
    |||||||| ||||||||||| |||||| |||||||||||||||||||||| |||||| |||||||| ||||    
T  35699662 ttcagttcgaaatgcaaacaattcaatccagttcaattattttaaatttatcaaacaattcagttcggttc 35699732  T

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Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 123 - 196
Target Start/End: Complemental strand, 18605281 - 18605208
Alignment:
Q  123 ttcagttctaaatgcaaacagttcaattcagttcaattattttaaatttagcaaacagttcagttcagttcggt 196  Q
    |||||||| |||||||||||||||  ||||||| ||||||||||||||||||||| |||| |||| ||||||||    
T  18605281 ttcagttcgaaatgcaaacagttcggttcagtttaattattttaaatttagcaaagagtttagtttagttcggt 18605208  T

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Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 132 - 193
Target Start/End: Complemental strand, 2259851 - 2259790
Alignment:
Q  132 aaatgcaaacagttcaattcagttcaattattttaaatttagcaaacagttcagttcagttc 193  Q
    ||||||||||||||| |||| |||||||||||||||||||| |||||| |||||||| ||||    
T  2259851 aaatgcaaacagttcgattcggttcaattattttaaatttaacaaacaattcagttcggttc 2259790  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 189
Target Start/End: Complemental strand, 30595566 - 30595460
Alignment:
Q  83 aaaggtatcaataataacagttcagttcagcccgaaacaattcagttcta-----aatgcaaacagttcaattcagttcaattattttaaatttagcaaa 177  Q
    ||||||||||||||||||||||||||||||  || || | |||||||| |     ||||||||||     |||||||||  |||||||||||||||||||    
T  30595566 aaaggtatcaataataacagttcagttcagttcggaatagttcagttcaattcgaaatgcaaaca-----attcagttcggttattttaaatttagcaaa 30595472  T
Q  178 cagttcagttca 189  Q
    || |||||||||    
T  30595471 caattcagttca 30595460  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 223
Target Start/End: Original strand, 3639868 - 3639933
Alignment:
Q  153 gttcaattattttaaatttagcaaacagttcagttcagttcggttcagttttcattctgaagtgaaccatg 223  Q
    ||||| |||||||||||||| ||||     || |||||||||||||||||||||| ||||| |||||||||    
T  3639868 gttcagttattttaaatttaacaaa-----catttcagttcggttcagttttcatcctgaaatgaaccatg 3639933  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 188
Target Start/End: Original strand, 36700227 - 36700297
Alignment:
Q  118 aacaattcagttctaaatgcaaacagttcaattcagttcaattattttaaatttagcaaacagttcagttc 188  Q
    |||| |||||||| ||| |||||||  || ||| |||||| ||| |||||||||| |||||||||||||||    
T  36700227 aacagttcagttcgaaacgcaaacatgtcgatttagttcagttaatttaaatttaacaaacagttcagttc 36700297  T

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Target: scaffold0024 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 130
Target Start/End: Complemental strand, 60161 - 60114
Alignment:
Q  83 aaaggtatcaataataacagttcagttcagcccgaaacaattcagttc 130  Q
    ||||||||||||||||||||||||||||||   |||||| ||||||||    
T  60161 aaaggtatcaataataacagttcagttcagtttgaaacagttcagttc 60114  T

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Target: scaffold0086 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 187
Target Start/End: Original strand, 20688 - 20732
Alignment:
Q  143 gttcaattcagttcaattattttaaatttagcaaacagttcagtt 187  Q
    ||||| ||||||| | ||||||||||||||||||||| |||||||    
T  20688 gttcagttcagttaatttattttaaatttagcaaacatttcagtt 20732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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