View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8091_low_59 (Length: 234)
Name: NF8091_low_59
Description: NF8091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8091_low_59 |
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Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 17 - 225
Target Start/End: Complemental strand, 1608313 - 1608105
Alignment:
| Q |
17 |
caaacactacacaacacaaatgaacaatcatttcaaaatcaaacatagagttgaattcagggaaatgcttgttcaattagccttaaaacaagctcttacc |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1608313 |
caaacactacacaacacaaatgaacaatcatttcaaaatcaaacatagagttgaattcagggaaatgcttgttcaattagccttaaaacaagctcttacc |
1608214 |
T |
|
| Q |
117 |
atgcaaaaagaagcacaagaaaattctcaacaacaacaaaactcattggtgcataaaacggttcatggtgattgtttgaagctatttgaaaacacaattt |
216 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1608213 |
atgcaaaaagaagcacaagaaaattctcaacaacaacaaaactcatttgtgcataaaacggttcatggtgattgtttgaagctatttgaaaacacaattt |
1608114 |
T |
|
| Q |
217 |
ttcatctca |
225 |
Q |
| |
|
||||||||| |
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|
| T |
1608113 |
ttcatctca |
1608105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 17 - 225
Target Start/End: Complemental strand, 1631803 - 1631595
Alignment:
| Q |
17 |
caaacactacacaacacaaatgaacaatcatttcaaaatcaaacatagagttgaattcagggaaatgcttgttcaattagccttaaaacaagctcttacc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1631803 |
caaacactacacaacacaaatgaacaatcatttcaaaatcaaacatagagttgaattcagggaaatgcttgttcaattagccttaaaacaagctcttacc |
1631704 |
T |
|
| Q |
117 |
atgcaaaaagaagcacaagaaaattctcaacaacaacaaaactcattggtgcataaaacggttcatggtgattgtttgaagctatttgaaaacacaattt |
216 |
Q |
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|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1631703 |
atgcaaaaagaagcacaagcaaattctcaacaacaacaaaactcattggtgcataaaacggttcatggtgattgtttgaagctatttgaaaacacaattt |
1631604 |
T |
|
| Q |
217 |
ttcatctca |
225 |
Q |
| |
|
||||||||| |
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|
| T |
1631603 |
ttcatctca |
1631595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 17 - 225
Target Start/End: Complemental strand, 1625320 - 1625112
Alignment:
| Q |
17 |
caaacactacacaacacaaatgaacaatcatttcaaaatcaaacatagagttgaattcagggaaatgcttgttcaattagccttaaaacaagctcttacc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1625320 |
caaacactacacaacacaaatgaacaatcatttcaaaatcaaacatagagttgaattcagggaaatgcttgttcaattagccttaaaacaagctcttacc |
1625221 |
T |
|
| Q |
117 |
atgcaaaaagaagcacaagaaaattctcaacaacaacaaaactcattggtgcataaaacggttcatggtgattgtttgaagctatttgaaaacacaattt |
216 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
1625220 |
atgcaaaaagaagcacaagacaattctcaacaacaacaaaactcatcggtgcataaaacggttcatggtgattgtttgaagctagttgaaaacacaattt |
1625121 |
T |
|
| Q |
217 |
ttcatctca |
225 |
Q |
| |
|
||||||||| |
|
|
| T |
1625120 |
ttcatctca |
1625112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 17 - 225
Target Start/End: Original strand, 10818742 - 10818947
Alignment:
| Q |
17 |
caaacactacacaacacaaatgaacaatcatttcaaaatcaaacatagagttgaattcagggaaatgcttgttcaattagccttaaaacaagctcttacc |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
10818742 |
caaacactacacaacacaaatgaacaatcatttcaaaatcaaacatagaattgaattcagggaaatgcttgttcaattagccttaaaccaagctcttacc |
10818841 |
T |
|
| Q |
117 |
atgcaaaaagaagcacaagaaaattctcaacaacaacaaaactcattggtgcataaaacggttcatggtgattgtttgaagctatttgaaaacacaattt |
216 |
Q |
| |
|
||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| ||||||| |
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| T |
10818842 |
atgcaaaaagaagcacatgaaaattct---caacaacaaaactcatcggtgcataaaacggttcatggtgattgtttgaagctatatgaaaatacaattt |
10818938 |
T |
|
| Q |
217 |
ttcatctca |
225 |
Q |
| |
|
||||||||| |
|
|
| T |
10818939 |
ttcatctca |
10818947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 177; Significance: 1e-95; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 17 - 225
Target Start/End: Complemental strand, 18786261 - 18786053
Alignment:
| Q |
17 |
caaacactacacaacacaaatgaacaatcatttcaaaatcaaacatagagttgaattcagggaaatgcttgttcaattagccttaaaacaagctcttacc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |
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| T |
18786261 |
caaacactacacaacacaaatgaacaatcacttcaaaatcaaacatagagttgaattcagggaaatgcttgttaaattagccttaaaccaagctcttacc |
18786162 |
T |
|
| Q |
117 |
atgcaaaaagaagcacaagaaaattctcaacaacaacaaaactcattggtgcataaaacggttcatggtgattgtttgaagctatttgaaaacacaattt |
216 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |||||||||||||||||||||| |
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| T |
18786161 |
atgcaaaaagaagcacaagataattctcaacaacaacaaaactcatccgtgcataaaacggttcatgctgattgtttcaagctatttgaaaacacaattt |
18786062 |
T |
|
| Q |
217 |
ttcatctca |
225 |
Q |
| |
|
||||||||| |
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|
| T |
18786061 |
ttcatctca |
18786053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 202
Target Start/End: Complemental strand, 10144758 - 10144721
Alignment:
| Q |
165 |
gtgcataaaacggttcatggtgattgtttgaagctatt |
202 |
Q |
| |
|
|||||| ||||||||||| ||||||||||||||||||| |
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|
| T |
10144758 |
gtgcatgaaacggttcatcgtgattgtttgaagctatt |
10144721 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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