View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8091_low_62 (Length: 205)
Name: NF8091_low_62
Description: NF8091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8091_low_62 |
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Alignment Details
Target: chr2 (Bit Score: 169; Significance: 8e-91; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 19 - 187
Target Start/End: Original strand, 9412828 - 9412996
Alignment:
| Q |
19 |
gaaaaccttcaagtaccttgcaatcacagctcccaagggcatcaagattccccagcttattgcatttagcactccatgagtctgaaaaacaattaacatc |
118 |
Q |
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| T |
9412828 |
gaaaaccttcaagtaccttgcaatcacagctcccaagggcatcaagattccccagcttattgcatttagcactccatgagtctgaaaaacaattaacatc |
9412927 |
T |
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| Q |
119 |
cttaatcaatttccaaattaccaaataaaatccaaaccttcttgttgtgtaacatctaaaactacagta |
187 |
Q |
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| T |
9412928 |
cttaatcaatttccaaattaccaaataaaatccaaaccttcttgttgtgtaacatctaaaactacagta |
9412996 |
T |
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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 106
Target Start/End: Complemental strand, 1029565 - 1029482
Alignment:
| Q |
23 |
accttcaagtaccttgcaatcacagctcccaagggcatcaagattccccagcttattgcatttagcactccatgagtctgaaaa |
106 |
Q |
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| T |
1029565 |
accttcaaataccttgctattactgctcccgttggcatcaagattccccaactaatagcatttagtactccatgtgtctgaaaa |
1029482 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 106
Target Start/End: Original strand, 55895361 - 55895444
Alignment:
| Q |
23 |
accttcaagtaccttgcaatcacagctcccaagggcatcaagattccccagcttattgcatttagcactccatgagtctgaaaa |
106 |
Q |
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|||||||| |||||||| || || |||||| ||||||||||||||||| || || |||||||| |||||||| ||||||||| |
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| T |
55895361 |
accttcaaataccttgctattactgctcccgttggcatcaagattccccaactaatagcatttagtactccatgtgtctgaaaa |
55895444 |
T |
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