View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8091_low_7 (Length: 648)
Name: NF8091_low_7
Description: NF8091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8091_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 403; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 156 - 632
Target Start/End: Original strand, 52624374 - 52624837
Alignment:
| Q |
156 |
caataatccaactccatttcaatcaataatcttcagatagcaacacctcaactaccctcttgcacaattagcacatgcaccacctatggaagtgaaaaag |
255 |
Q |
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| T |
52624374 |
caataacccaactccatttcaatcaataatcttcagatagcaacacctcaactaccctcttgcacaattagcacatgcaccacctatggaagtgaaaaag |
52624473 |
T |
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| Q |
256 |
aagaaggnnnnnnncacctgtttctaattctttaattatttatcatttttacacttgtatcattcattctgagtttatttcgtttgctgcattacatgtc |
355 |
Q |
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| T |
52624474 |
aagaaggaaaaaaacacctgtttctaattctttaattatttatcatttttacacttgtatcattc----tgagtttatttcgtttgctgcattacatgtc |
52624569 |
T |
|
| Q |
356 |
atccttagtaatgacattggaaggttcaaaatgaaatattcgctggcctgttgctaagattcgttgagggtcgaattgcatcttcatggcattgaattgg |
455 |
Q |
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| T |
52624570 |
atccttagtaatgac---------ttcaaaatgaaatattcgctggcctgttgctaagattcgttgagggtcgaattgcatcttcatggcattgaattgg |
52624660 |
T |
|
| Q |
456 |
gtccatttatctccaaagtggtccatccactcctgcattgttgtgtaatggggtaggtactgtttaacccctatcttcgaatcatgacagaatcccagga |
555 |
Q |
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| T |
52624661 |
gtccatttatctccaaagtggtccatccactcctgcattgttgtgtaatggggtaggtactgtttaacccctatcttcgaatcatgacagaatcccagga |
52624760 |
T |
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| Q |
556 |
tctgacggttctgattagtcaggtgctccagtgtctcagcatccaaagctgatctcagaaatgccaccaggtaaaac |
632 |
Q |
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| T |
52624761 |
tctgacggttctgattagtcaggtgctccagtgtctcagcatccaaagctgatctcagaaatgccaccaggtaaaac |
52624837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 156 - 296
Target Start/End: Original strand, 52616808 - 52616948
Alignment:
| Q |
156 |
caataatccaactccatttcaatcaataatcttcagatagcaacacctcaactaccctcttgcacaattagcacatgcaccacctatggaagtgaaaaag |
255 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52616808 |
caataacccaactccatttcaatcaataatcttcagatagcaacacctcaactaccctcttgcacaattagcacatgcaccacctatggaagtgaaaaag |
52616907 |
T |
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| Q |
256 |
aagaaggnnnnnnncacctgtttctaattctttaattattt |
296 |
Q |
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| T |
52616908 |
aagaaggaaaaaaacacctgtttctaattctttaattattt |
52616948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 26 - 158
Target Start/End: Original strand, 52616635 - 52616760
Alignment:
| Q |
26 |
aaacagatgcttgtatgtggataagacaacaaaatcagacgggtggtcgggatcacgggcgctgcactgagacatgtcatgtgtattgtcatctcccctt |
125 |
Q |
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| T |
52616635 |
aaacagctgcttgtatgtggataagacaacaaaatcagacgggtggtcgggatcacgggcgctgcactgagacatgtca-------tgtcatctcccctt |
52616727 |
T |
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| Q |
126 |
ccccccaaaaaggccccacgtctcttagatcaa |
158 |
Q |
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| T |
52616728 |
ccccccaaaaaggccccacgtctcttagatcaa |
52616760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 21 - 107
Target Start/End: Original strand, 52624205 - 52624291
Alignment:
| Q |
21 |
gaaacaaacagatgcttgtatgtggataagacaacaaaatcagacgggtggtcgggatcacgggcgctgcactgagacatgtcatgt |
107 |
Q |
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| T |
52624205 |
gaaacaaacagctgcttgtatgtggataagacaacaaaatcagacgggtggtcgggatcacgggcgctgcactgagacatgtcatgt |
52624291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 288 - 320
Target Start/End: Original strand, 52617006 - 52617038
Alignment:
| Q |
288 |
taattatttatcatttttacacttgtatcattc |
320 |
Q |
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| T |
52617006 |
taattatttatcatttttacacttgtatcattc |
52617038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 129 - 158
Target Start/End: Original strand, 52624297 - 52624326
Alignment:
| Q |
129 |
cccaaaaaggccccacgtctcttagatcaa |
158 |
Q |
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| T |
52624297 |
cccaaaaaggccccacgtctcttagatcaa |
52624326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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