View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8091_low_8 (Length: 642)

Name: NF8091_low_8
Description: NF8091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8091_low_8
NF8091_low_8
[»] chr1 (12 HSPs)
chr1 (56-308)||(49250248-49250488)
chr1 (146-329)||(269995-270175)
chr1 (356-550)||(269811-269994)
chr1 (463-625)||(28361304-28361465)
chr1 (172-288)||(14945436-14945549)
chr1 (222-308)||(49250029-49250114)
chr1 (172-288)||(14940194-14940307)
chr1 (172-288)||(14950201-14950314)
chr1 (172-288)||(14954442-14954555)
chr1 (181-308)||(14941553-14941679)
chr1 (181-308)||(14951560-14951686)
chr1 (181-308)||(14955801-14955927)
[»] chr8 (1 HSPs)
chr8 (179-265)||(8791002-8791088)
[»] chr7 (2 HSPs)
chr7 (199-262)||(6205758-6205819)
chr7 (565-625)||(35182626-35182686)
[»] chr2 (1 HSPs)
chr2 (346-425)||(32725757-32725835)


Alignment Details
Target: chr1 (Bit Score: 132; Significance: 3e-68; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 56 - 308
Target Start/End: Original strand, 49250248 - 49250488
Alignment:
Q  56 ttagagaatggttttactgatatttgtaattatgtgccagtttcattgatattttgattactttattgatactctattttgttgatcaagagaaagaaag 155  Q
    |||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||           ||||||||||| ||||||||||    
T  49250248 ttagagaaaggttttactgatatttgtaattatgtgctagtttcattgatattttgattactttatt-----------ttgttgatcaaaagaaagaaag 49250336  T
Q  156 aaaagtgaaatcaa-ggaatttgataacaaagtaacttcatttcattgatactcctcaatttgaatattttacatgtgttcaactttacaaccactcata 254  Q
    ||| |||||||||| |||||||||||||||||||||||||||||||  |||||| ||||||||||| ||||||||||| ||||||||||||||||| |||    
T  49250337 aaatgtgaaatcaaaggaatttgataacaaagtaacttcatttcatc-atactcttcaatttgaattttttacatgtggtcaactttacaaccacttata 49250435  T
Q  255 caactaaagtaaaaataaatccttaaacctataaatgatgaattccttatacaa 308  Q
    |||| ||||| | ||||||||||||||| ||||||||| |||| |||| |||||    
T  49250436 caacgaaagt-acaataaatccttaaacttataaatgacgaatcccttgtacaa 49250488  T

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Target: chr1; HSP #2
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 146 - 329
Target Start/End: Complemental strand, 270175 - 269995
Alignment:
Q  146 agaaagaaagaaaagtgaaatcaaggaatttgataacaaagtaacttcatttcattgatactcctcaatttgaatattttacatgtgttcaactttacaa 245  Q
    ||||||||||||| ||||||||||||||||||||||||| |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||    
T  270175 agaaagaaagaaacgtgaaatcaaggaatttgataacaaggtaacttcatttcactaatactcctcaatttgaatattttacatgtgttcaactttacaa 270076  T
Q  246 ccactcatacaactaaagtaaaaataaatccttaaacctataaatgatgaattccttatacaaaactctctaggcgtgccacct 329  Q
    |  ||||||||| |||| | |||| |||| |||||||||||  ||||||||| |||||||||||||||| ||||| ||||||||    
T  270075 cggctcatacaattaaa-ttaaaacaaattcttaaacctat--atgatgaatcccttatacaaaactctttaggcatgccacct 269995  T

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Target: chr1; HSP #3
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 356 - 550
Target Start/End: Complemental strand, 269994 - 269811
Alignment:
Q  356 ttttttacatatcaaatacacattctgcagcttcaaattttagagtttcccttcacttcacattttaaaggttc-cttcccttgcaa-gacaatgtaaaa 453  Q
    |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||          |||||||| ||  |||||||| ||||||||  ||    
T  269994 ttttttacatat-aaatacacattctgcaacttcaaattttagagtttcccttcac----------aaaggttcgctagccttgcaaagacaatgtcgaa 269906  T
Q  454 tgactcttgaaattgacataatcatcatttgcaagacaatttttgaataattcctgaaattgacatattcattctcacatcagaaattgaaagagtt 550  Q
    ||||| |  | |||| |||||||||| ||||||| |||| |||||||||| |||||||||||||  |||||||||||||||||||||||||||||||    
T  269905 tgactatatatattggcataatcatcctttgcaaaacaacttttgaataactcctgaaattgac--attcattctcacatcagaaattgaaagagtt 269811  T

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Target: chr1; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 463 - 625
Target Start/End: Complemental strand, 28361465 - 28361304
Alignment:
Q  463 aaattgacataatcatcatttgcaagacaatttttgaataattcctgaaattgacatattcattctcacatcagaaattgaaagagttaagctaatattc 562  Q
    ||||||||||| ||||  ||||||||||||| ||||| |||||||| ||||| |||||||||||||||||||  ||||||||| |||| |  |||||||     
T  28361465 aaattgacatattcattctttgcaagacaatgtttgattaattcctaaaatttacatattcattctcacatctaaaattgaaaaagtt-acataatattt 28361367  T
Q  563 ccaactcataattgtctatacatatagtttaaatctaaattgcagaatttcatagttcaaatc 625  Q
    |||||||| |||| ||||| |||| | ||||||| ||||| | ||  |||||||||| |||||    
T  28361366 ccaactcagaattatctatgcataaaatttaaatttaaatcgaagggtttcatagtttaaatc 28361304  T

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Target: chr1; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 172 - 288
Target Start/End: Original strand, 14945436 - 14945549
Alignment:
Q  172 aatttgataacaaagtaacttcatttcattgatactcctcaatttgaatattttacatgtgttcaactttacaaccactcatacaactaaagtaaaaata 271  Q
    |||||||  |||||||||||||||||||| ||||||| ||||||||||||||||||| | ||| ||| ||||||||||  ||||||||||||| | ||||    
T  14945436 aatttgaatacaaagtaacttcatttcatcgatactcttcaatttgaatattttacacg-gtt-aaccttacaaccacctatacaactaaagt-acaata 14945532  T
Q  272 aatccttaaacctataa 288  Q
    |||||||||| ||||||    
T  14945533 aatccttaaatctataa 14945549  T

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Target: chr1; HSP #6
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 222 - 308
Target Start/End: Complemental strand, 49250114 - 49250029
Alignment:
Q  222 ttttacatgtgttcaactttacaaccactcatacaactaaagtaaaaataaatccttaaacctataaatgatgaattccttatacaa 308  Q
    ||||||||||| ||||||||||||||||| ||||||||||||| | |||||||| |||||||||| |||||||||| ||||| ||||    
T  49250114 ttttacatgtggtcaactttacaaccactaatacaactaaagt-acaataaatcattaaacctattaatgatgaatcccttaaacaa 49250029  T

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Target: chr1; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 172 - 288
Target Start/End: Original strand, 14940194 - 14940307
Alignment:
Q  172 aatttgataacaaagtaacttcatttcattgatactcctcaatttgaatattttacatgtgttcaactttacaaccactcatacaactaaagtaaaaata 271  Q
    |||||||  |||||||||||||||||||| ||||||| ||||||| ||||||||||||| ||| ||| ||||||||||  |||||||||| || | ||||    
T  14940194 aatttgaatacaaagtaacttcatttcatcgatactcttcaatttcaatattttacatg-gtt-aaccttacaaccacctatacaactaacgt-acaata 14940290  T
Q  272 aatccttaaacctataa 288  Q
    |||||||||| ||||||    
T  14940291 aatccttaaatctataa 14940307  T

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Target: chr1; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 172 - 288
Target Start/End: Original strand, 14950201 - 14950314
Alignment:
Q  172 aatttgataacaaagtaacttcatttcattgatactcctcaatttgaatattttacatgtgttcaactttacaaccactcatacaactaaagtaaaaata 271  Q
    |||||||  |||||||||||||||||||| ||||||| ||||||| ||||||||||||| ||| ||| ||||||||||  |||||||||| || | ||||    
T  14950201 aatttgaatacaaagtaacttcatttcatcgatactcttcaatttcaatattttacatg-gtt-aaccttacaaccacctatacaactaacgt-acaata 14950297  T
Q  272 aatccttaaacctataa 288  Q
    |||||||||| ||||||    
T  14950298 aatccttaaatctataa 14950314  T

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Target: chr1; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 172 - 288
Target Start/End: Original strand, 14954442 - 14954555
Alignment:
Q  172 aatttgataacaaagtaacttcatttcattgatactcctcaatttgaatattttacatgtgttcaactttacaaccactcatacaactaaagtaaaaata 271  Q
    |||||||  |||||||||||||||||||| ||||||| ||||||| ||||||||||||| ||| ||| ||||||||||  |||||||||| || | ||||    
T  14954442 aatttgaatacaaagtaacttcatttcatcgatactcttcaatttcaatattttacatg-gtt-aaccttacaaccacctatacaactaacgt-acaata 14954538  T
Q  272 aatccttaaacctataa 288  Q
    |||||||||| ||||||    
T  14954539 aatccttaaatctataa 14954555  T

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Target: chr1; HSP #10
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 181 - 308
Target Start/End: Original strand, 14941553 - 14941679
Alignment:
Q  181 acaaagtaacttcattt-cattgata-ctcctcaatttgaatattttacatgtgttcaactttacaaccactcatacaactaaagtaaaaataaatcctt 278  Q
    ||||||||||||||||| |||  ||| ||| ||||||||||||||||||||| ||| | ||||||||||||  |||||||||||||| || |||||||||    
T  14941553 acaaagtaacttcattttcatctataactcttcaatttgaatattttacatg-gttga-ctttacaaccacctatacaactaaagtacaa-taaatcctt 14941649  T
Q  279 aaacctataaatgatgaattccttatacaa 308  Q
     || ||||||||||||||| | ||||||||    
T  14941650 gaatctataaatgatgaatccattatacaa 14941679  T

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Target: chr1; HSP #11
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 181 - 308
Target Start/End: Original strand, 14951560 - 14951686
Alignment:
Q  181 acaaagtaacttcattt-cattgata-ctcctcaatttgaatattttacatgtgttcaactttacaaccactcatacaactaaagtaaaaataaatcctt 278  Q
    ||||||||||||||||| |||  ||| ||| ||||||||||||||||||||| ||| | ||||||||||||  |||||||||||||| || |||||||||    
T  14951560 acaaagtaacttcattttcatctataactcttcaatttgaatattttacatg-gttga-ctttacaaccacctatacaactaaagtacaa-taaatcctt 14951656  T
Q  279 aaacctataaatgatgaattccttatacaa 308  Q
     || ||||||||||||||| | ||||||||    
T  14951657 gaatctataaatgatgaatccattatacaa 14951686  T

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Target: chr1; HSP #12
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 181 - 308
Target Start/End: Original strand, 14955801 - 14955927
Alignment:
Q  181 acaaagtaacttcattt-cattgata-ctcctcaatttgaatattttacatgtgttcaactttacaaccactcatacaactaaagtaaaaataaatcctt 278  Q
    ||||||||||||||||| |||  ||| ||| ||||||||||||||||||||| ||| | ||||||||||||  |||||||||||||| || |||||||||    
T  14955801 acaaagtaacttcattttcatctataactcttcaatttgaatattttacatg-gttga-ctttacaaccacctatacaactaaagtacaa-taaatcctt 14955897  T
Q  279 aaacctataaatgatgaattccttatacaa 308  Q
     || ||||||||||||||| | ||||||||    
T  14955898 gaatctataaatgatgaatccattatacaa 14955927  T

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Target: chr8 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 179 - 265
Target Start/End: Complemental strand, 8791088 - 8791002
Alignment:
Q  179 taacaaagtaacttcatttcattgatactcctcaatttgaatattttacatgtgttcaactttacaaccactcatacaactaaagta 265  Q
    ||||||||||| ||||||| |||||||||||||||||||||||||||| ||||| | ||||||||||||||  ||| ||||||||||    
T  8791088 taacaaagtaatttcatttgattgatactcctcaatttgaatattttatatgtggtaaactttacaaccaccgataaaactaaagta 8791002  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 199 - 262
Target Start/End: Complemental strand, 6205819 - 6205758
Alignment:
Q  199 attgatactcctcaatttgaatattttacatgtgttcaactttacaaccactcatacaactaaa 262  Q
    |||| ||||| ||||||||||| ||||||||||| |||||||||||||||||  ||||||||||    
T  6205819 attggtactcttcaatttgaatgttttacatgtggtcaactttacaaccact--tacaactaaa 6205758  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 565 - 625
Target Start/End: Original strand, 35182626 - 35182686
Alignment:
Q  565 aactcataattgtctatacatatagtttaaatctaaattgcagaatttcatagttcaaatc 625  Q
    |||||| |||||||| |||||| |||| ||||||||||||||||  |||||| ||||||||    
T  35182626 aactcagaattgtctttacataaagttcaaatctaaattgcagaggttcatacttcaaatc 35182686  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 346 - 425
Target Start/End: Complemental strand, 32725835 - 32725757
Alignment:
Q  346 gatccactagttttttacatatcaaatacacattctgcagcttcaaattt-tagagtttcccttcacttcacattttaaag 425  Q
    |||||| ||||| ||||||||| |  |||||| ||||||||||| | ||| ||  ||||||||||||||||||||||||||    
T  32725835 gatccaatagttctttacatatga--tacacactctgcagcttccattttgtaaggtttcccttcacttcacattttaaag 32725757  T

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