View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8092_high_1 (Length: 488)
Name: NF8092_high_1
Description: NF8092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8092_high_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 247 - 477
Target Start/End: Complemental strand, 9498079 - 9497849
Alignment:
| Q |
247 |
agtcaattaataagatcaataacacatacacaatgtactgtgattaagtgataaagcaaaatgtatcatcatgtctcattattcaggaaagccatgttcg |
346 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9498079 |
agtcaattaataagatccataacacatacacaatgtactgtgattaagtgataaagcaaaatgtatcatcatgtctcattattcaggaaagccatgttcg |
9497980 |
T |
|
| Q |
347 |
ggacagctctaaccaaagcatacagatccactaacaattaacatcagatcaatatcttttgttgtcatttacctcaccatattgtatttcttattgcttc |
446 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||| |
|
|
| T |
9497979 |
ggacagctctaaccaaagcatacagatccactaacaattaacatcagatgaatatcttttgttgtcatttacctcaccatattgtatttctttttgtttc |
9497880 |
T |
|
| Q |
447 |
aaataacaagaatcaatttgttaacaccaaa |
477 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |
|
|
| T |
9497879 |
aaataacaagaatcaatttgttaacatcaaa |
9497849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 9498325 - 9498162
Alignment:
| Q |
1 |
agagaatcattttttacccattcctgattggcaagatacctagctgcatgctggcacaaaaacacagtagtgtcaattgtctgacatactgagagatttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
9498325 |
agagaatcattttttacccattcctgattggcaagatacctagctgcatgctggcacaaaaacacagtagtgtcaattgtctgacatactgaaagatttc |
9498226 |
T |
|
| Q |
101 |
ttgttcttgtgattattgttgtaaaaatcaatacatcttccaatcacatgtttacaaagtattg |
164 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9498225 |
ttgttcttgagattattgttgtaaaaatcaatacatcttccaatcacatgtttacaaagtattg |
9498162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University