View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8092_high_2 (Length: 465)
Name: NF8092_high_2
Description: NF8092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8092_high_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 166 - 450
Target Start/End: Original strand, 29594462 - 29594746
Alignment:
| Q |
166 |
attcttcttgtcattctccagtaatttggcgtgaaggttatctgatatgtgtataagttttgcaagagcttctgatgataaaaatcccaatgaacacaaa |
265 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
29594462 |
attcttcttgccattctccagtaatttggcgtgaaggttatctgatatgtgtataagttttgcaagagcttctaatgataaaaatcccaatgaacacaaa |
29594561 |
T |
|
| Q |
266 |
caaaactaaaataacaaagatattaacattaatataccaccagtttgatcttgaacaccttgtaagatttttgataagctttttcaatcacactaatttt |
365 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
29594562 |
caaaactaaaataacaaagatattaacgttaatataccaccagtttgatcttgaacaccttgtaagattttttataagctttttcaatcacactaatttt |
29594661 |
T |
|
| Q |
366 |
atcaaaggattggttttgcattacacaaatttaagagagcatatcttgcaactcagtcttctattttatttacaaggtttcatca |
450 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29594662 |
atcaaaggattggttttgcattacacaaatttaagagagcagatattgcaactcagtcttctattttatttacaaggtttcatca |
29594746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 249; Significance: 1e-138; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 166 - 450
Target Start/End: Original strand, 52077355 - 52077639
Alignment:
| Q |
166 |
attcttcttgtcattctccagtaatttggcgtgaaggttatctgatatgtgtataagttttgcaagagcttctgatgataaaaatcccaatgaacacaaa |
265 |
Q |
| |
|
|||||||||| ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
52077355 |
attcttcttgccattctccactaatttggcgtgaaggttatctgatatgggtataagttttgcaagagcttctaatgataaaaatcccaatgaacacaaa |
52077454 |
T |
|
| Q |
266 |
caaaactaaaataacaaagatattaacattaatataccaccagtttgatcttgaacaccttgtaagatttttgataagctttttcaatcacactaatttt |
365 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
52077455 |
caaaactaaaataacaaagatattaacattaatataccaccagtttgatcttgaacaccttgtaagatttttcataagctttttcaatcacactaatttt |
52077554 |
T |
|
| Q |
366 |
atcaaaggattggttttgcattacacaaatttaagagagcatatcttgcaactcagtcttctattttatttacaaggtttcatca |
450 |
Q |
| |
|
|||||| || ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52077555 |
atcaaatgactggttttgcattacacaaatttaagagagcagatattgcaactcagtcttctattttatttacaaggtttcatca |
52077639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 166 - 451
Target Start/End: Complemental strand, 29058916 - 29058631
Alignment:
| Q |
166 |
attcttcttgtcattctccagtaatttggcgtgaaggttatctgatatgtgtataagttttgcaagagcttctgatgataaaaatcccaatgaacacaaa |
265 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
29058916 |
attcttcttgccattctccagtaatttgaagtgaaggttatctgatatgggtataagttttgcaagagcttctaatgataaaaatcccaatgaacacaaa |
29058817 |
T |
|
| Q |
266 |
caaaactaaaataacaaagatattaacattaatataccaccagtttgatcttgaacaccttgtaagatttttgataagctttttcaatcacactaatttt |
365 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
29058816 |
caaaactaaaataacaaagatattaacatcaatataccactagtttgatcttgaacaccttgtaagatttttcataagctttttcaatcacactaatttt |
29058717 |
T |
|
| Q |
366 |
atcaaaggattggttttgcattacacaaatttaagagagcatatcttgcaactcagtcttctattttatttacaaggtttcatcat |
451 |
Q |
| |
|
||||||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29058716 |
atcaaaggactggctttgcattacacaaatttaagagagcagatcttgcaactcagtcttctattttatttacaaggtttcatcat |
29058631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 307 - 450
Target Start/End: Original strand, 52088298 - 52088441
Alignment:
| Q |
307 |
agtttgatcttgaacaccttgtaagatttttgataagctttttcaatcacactaattttatcaaaggattggttttgcattacacaaatttaagagagca |
406 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| ||| |
|
|
| T |
52088298 |
agtttgatcttgaacaccttgtaagatttttcataagctttttcaatcacactaattttatcaaatgactggttttgcattacacaaatttaagagggca |
52088397 |
T |
|
| Q |
407 |
tatcttgcaactcagtcttctattttatttacaaggtttcatca |
450 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52088398 |
ggtcttgcaactcagtcttctattttatttacaaggtttcatca |
52088441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 85 - 169
Target Start/End: Complemental strand, 29059168 - 29059084
Alignment:
| Q |
85 |
gtgaagtttagcatgggaaagaagggttgttttttatgatgggaaagttgatgttacaatcatagatatatcatttaatttattc |
169 |
Q |
| |
|
|||||||||||||| ||||| || |||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
29059168 |
gtgaagtttagcatatgaaaggagcgttgttttctattatgggaaagttgatgttacaaccatagatatatcatttaatttattc |
29059084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 84 - 169
Target Start/End: Original strand, 52077102 - 52077187
Alignment:
| Q |
84 |
ggtgaagtttagcatgggaaagaagggttgttttttatgatgggaaagttgatgttacaatcatagatatatcatttaatttattc |
169 |
Q |
| |
|
|||| |||||| |||||||||| || ||| ||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
52077102 |
ggtggagtttaacatgggaaaggagagttatttcccatgatgggaaagttgatgttacaaccatagatatatcatttaatttattc |
52077187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 109; Significance: 1e-54; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 198 - 437
Target Start/End: Complemental strand, 51288793 - 51288555
Alignment:
| Q |
198 |
gaaggttatctgatatgtgtataagttttgcaagagcttctgatgataaaaa-tcccaatgaacacaaacaaaactaaaataacaaagatattaacatta |
296 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||||||| || |||||||||| ||||| ||||||||||||||||||||||| |||||||| |||||| | |
|
|
| T |
51288793 |
gaaggttatctgatatgggtataaattttgcaagagctcctaatgataaaaaatcccactgaacacaaacaaaactaaaatagcaaagatactaacatca |
51288694 |
T |
|
| Q |
297 |
atataccaccagtttgatcttgaacaccttgtaagatttttgataagctttttcaatcacactaattttatcaaaggattggttttgcattacacaaatt |
396 |
Q |
| |
|
|||| | ||| || ||||||| |||||||||||| |||||| ||||||||||||||||||||||| ||||| || ||| |||||||| || | ||||||| |
|
|
| T |
51288693 |
atat-ctaccggtgtgatctttaacaccttgtaaaatttttcataagctttttcaatcacactaa-tttataaagggactggttttggatcatacaaatt |
51288596 |
T |
|
| Q |
397 |
taagagagcatatcttgcaactcagtcttctattttattta |
437 |
Q |
| |
|
||||||||| | ||| |||||| | |||||||||||||| |
|
|
| T |
51288595 |
taagagagcggaatttgaaactcaattttctattttattta |
51288555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University