View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8092_high_3 (Length: 384)
Name: NF8092_high_3
Description: NF8092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8092_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 343; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 367
Target Start/End: Complemental strand, 39109498 - 39109132
Alignment:
| Q |
1 |
aaggtgattgatgatgaaatcttcattgtaacgaagactacgaccagaagcagtgtgatcagcatagacaagttttcgtcttccaaacggagaatcaaac |
100 |
Q |
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| T |
39109498 |
aaggtgattgatgatgaaatcttcattgtaacgaagactacgaccagaagcagtgtgatcagcatagacaagttttcgtcttccaaacggagaatcaaac |
39109399 |
T |
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| Q |
101 |
tttgcatcattacctatgatttgagaccgcaaccaacacagtttttcctccaccctttcattacaaggcaggtccatttccacgagtttcttaaaggatt |
200 |
Q |
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| T |
39109398 |
tttgcataattacctatgatttgagaccgcaaccaacagagtttttcctccacactttcattacaaggcaggtccatttccacaagtttcttaaaggatt |
39109299 |
T |
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| Q |
201 |
cagggtggtagcaaaaatcatgagatgtttctaatttgtcgtttgttttggttaaagatacatagtccccatttttggccttgttctgactttgagctaa |
300 |
Q |
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| T |
39109298 |
cagggtggtagcaaaaatcatgagatgtttctaatttgttgtttgttttggttaaagatacataatccccatttttggccttgttctgactttgagctaa |
39109199 |
T |
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| Q |
301 |
aataggtatgatttctgctaacaatggttgttctatctccataagcaagaattgaatatagtgatgt |
367 |
Q |
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| T |
39109198 |
aataggtatgatttctgctaacaatggttgttctatctccataagcaagaattgaatatagtgatgt |
39109132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 12 - 172
Target Start/End: Complemental strand, 39100561 - 39100401
Alignment:
| Q |
12 |
tgatgaaatcttcattgtaacgaagactacgaccagaagcagtgtgatcagcatagacaagttttcgtcttccaaacggagaatcaaactttgcatcatt |
111 |
Q |
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| T |
39100561 |
tgatgaagttttcaatgaaatgaagactgcgacctgaagctgtgtgatcagaatagacaagttttctagtaccaaaaggagagttgaattctacatcatt |
39100462 |
T |
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| Q |
112 |
acctatgatttgagaccgcaaccaacacagtttttcctccaccctttcattacaaggcagg |
172 |
Q |
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| T |
39100461 |
accaatgatttgtgatctcaaccagcatagtttttcttccactgattcattacatggcagg |
39100401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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